genome.fa.s81.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold81
Parameters: 2 7 7 80 10 50 1000
Length:  1151237

Tables:   1   2   3   4   5   6   7   8   9   

This is table  8  of  9  ( 1060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
870251--870395	59	2.4	61	76	16	158	53	0	0	46	1.05
870706--870783	38	2.2	38	84	9	110	55	0	2	42	1.13
871116--871151	17	2.1	17	89	0	54	38	0	0	61	0.96
879288--879362	31	2.4	31	82	4	80	53	0	1	45	1.08
879281--879413	10	13.9	10	68	21	54	54	0	1	44	1.09
879683--879728	15	2.9	15	78	12	56	45	2	0	52	1.13
880319--880411	23	4.0	23	75	19	79	62	1	3	33	1.18
880389--880485	25	3.8	25	76	11	81	52	0	1	46	1.07
880924--880967	22	1.9	22	86	9	61	40	0	2	56	1.11
881977--882021	14	3.1	15	81	9	58	62	4	2	31	1.27
884493--884533	2	20.5	2	89	0	64	48	4	0	46	1.23
886474--886502	3	10.0	3	92	7	51	31	0	0	68	0.89
887699--887737	17	2.2	17	95	4	69	58	5	0	35	1.20
887725--887816	33	2.8	33	78	5	96	63	1	2	33	1.14
887756--887822	19	3.8	19	76	13	63	67	0	2	29	1.06
887765--887816	11	4.7	11	74	9	52	67	0	1	30	1.02
888109--888140	14	2.1	16	88	11	50	46	0	0	53	1.00
889279--889311	15	2.3	15	89	5	50	18	0	0	81	0.68
891218--891251	3	11.3	3	100	0	68	67	0	0	32	0.91
891376--891423	22	2.2	22	84	0	60	37	0	0	62	0.95
891952--891985	11	3.0	11	91	4	50	35	0	0	64	0.94
892202--892265	26	2.5	26	82	10	69	70	6	1	21	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
892248--892282	15	2.3	15	90	9	54	71	0	0	28	0.86
892229--892276	20	2.5	19	80	9	53	72	2	0	25	0.95
892697--892753	20	2.8	20	86	0	78	42	0	0	57	0.98
892723--892797	9	8.7	9	70	16	52	44	1	4	50	1.29
892743--892794	22	2.3	23	80	6	70	40	1	5	51	1.37
893307--893386	32	2.4	33	81	4	99	45	1	1	52	1.16
893306--893386	33	2.4	34	79	8	94	44	1	1	53	1.16
895522--895593	25	3.0	22	72	21	65	43	2	1	52	1.24
895522--895593	24	3.0	23	75	18	76	43	2	1	52	1.24
895776--895809	13	2.5	14	90	4	52	58	0	0	41	0.98
898833--898886	24	2.3	23	81	15	65	48	0	0	51	1.00
898847--898898	24	2.1	26	82	7	63	48	0	0	51	1.00
898827--898904	26	2.8	29	75	20	85	46	0	0	53	1.00
898883--898923	21	2.0	20	86	13	57	36	0	0	63	0.95
899578--899653	31	2.4	31	82	8	91	61	0	0	38	0.96
899685--899723	14	2.8	14	88	0	51	35	0	5	58	1.20
905653--905677	6	4.2	6	100	0	50	48	0	0	52	1.00
906472--906518	17	2.8	17	81	15	62	70	2	2	25	1.10
906602--906632	2	15.5	2	100	0	62	48	0	0	51	1.00
909737--909784	13	3.5	14	86	11	64	52	6	0	41	1.27
909969--909995	14	1.9	14	100	0	54	66	0	3	29	1.09
912039--912081	21	2.1	20	83	12	52	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
912607--912643	17	2.3	15	90	9	56	59	0	0	40	0.97
912603--912651	24	2.0	25	84	11	66	57	0	0	42	0.99
912663--912706	21	2.0	22	86	4	63	63	0	0	36	0.95
912665--912710	23	2.0	23	87	8	67	65	0	0	34	0.93
912685--912715	16	1.9	16	93	0	53	61	0	0	38	0.96
912992--913057	17	3.7	18	73	19	50	36	0	0	63	0.95
914218--914251	18	1.9	18	88	5	52	44	2	0	52	1.16
914710--914800	20	4.5	21	75	10	75	51	0	0	48	1.00
915452--915493	21	2.0	21	81	9	50	64	4	2	28	1.26
915541--915581	2	20.5	2	89	0	64	48	4	0	46	1.23
916157--916240	41	2.0	41	100	0	168	48	22	9	19	1.77
917203--917380	14	13.1	14	66	23	64	57	1	1	39	1.13
917203--917324	16	7.7	16	68	14	65	56	1	0	40	1.15
917330--917374	22	2.0	22	87	8	65	66	0	0	33	0.92
917340--917377	18	2.2	17	90	4	58	71	0	0	28	0.87
917977--918019	16	2.5	18	85	7	54	41	2	2	53	1.26
918859--918892	2	17.0	2	100	0	68	50	0	0	50	1.00
919315--919355	22	2.0	20	85	9	55	43	0	0	56	0.99
919324--919391	25	2.8	24	76	18	70	45	0	0	54	0.99
919629--919663	17	2.1	17	89	10	54	48	0	0	51	1.00
920076--920200	63	2.0	64	85	6	173	46	5	11	36	1.63
920687--920728	19	2.2	20	87	12	61	2	16	0	80	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
921587--921643	16	3.7	14	82	17	69	57	0	0	42	0.98
921587--921643	7	7.4	7	81	18	69	57	0	0	42	0.98
921585--921641	24	2.4	24	91	2	98	56	0	0	43	0.99
929938--929962	9	2.8	9	100	0	50	88	0	0	12	0.53
930590--930647	17	3.2	17	79	16	64	46	1	0	51	1.11
930535--930656	49	2.4	52	77	10	121	45	1	1	50	1.21
930583--930673	19	4.7	19	72	23	66	45	1	1	52	1.15
930571--930672	23	4.3	24	71	18	79	45	0	0	52	1.13
931184--931269	30	2.7	31	82	12	104	43	3	1	52	1.26
931181--931266	16	5.8	14	74	23	61	44	3	1	51	1.26
931184--931265	31	2.7	30	85	10	105	43	3	1	51	1.27
931580--931630	24	2.1	25	85	3	68	39	3	1	54	1.30
936539--936614	28	2.7	27	68	9	64	51	2	0	46	1.15
937508--937564	18	3.1	20	76	14	61	54	1	5	38	1.33
939146--939185	2	20.0	2	100	0	80	50	0	0	50	1.00
939920--940043	57	2.1	57	92	5	205	35	8	20	34	1.84
941505--941626	60	2.0	60	100	0	244	36	11	11	40	1.77
948852--948917	25	2.8	24	79	18	68	48	1	3	46	1.26
956278--956423	27	5.6	27	67	21	78	44	0	0	54	1.10
956351--956392	17	2.6	16	79	20	52	47	0	0	52	1.00
956354--956387	18	1.9	17	88	5	50	50	0	0	50	1.00
956367--956416	26	1.9	26	87	0	73	42	2	0	56	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
960782--960815	17	1.9	18	88	5	52	70	0	0	29	0.87
960978--961029	12	4.2	12	76	9	50	57	0	0	42	0.98
961004--961057	11	4.9	11	75	22	51	51	0	0	48	1.00
960996--961057	22	2.9	21	76	21	65	53	0	0	46	1.00
961340--961380	20	2.0	20	100	0	82	39	0	0	60	0.96
961329--961365	14	2.5	15	86	8	58	37	0	0	62	0.96
961451--961527	17	4.7	17	71	14	54	51	0	3	44	1.19
961485--961511	14	1.9	14	100	0	54	62	0	0	37	0.95
961664--961702	2	19.5	2	100	0	78	51	0	0	48	1.00
961714--961766	20	2.6	20	75	3	61	58	0	0	41	0.98
961827--961890	19	3.3	19	67	25	53	67	4	1	26	1.19
962366--962398	13	2.4	14	85	10	50	39	0	0	60	0.97
962846--962913	22	3.0	22	81	12	66	54	0	0	45	0.99
964662--964697	18	2.0	18	94	0	63	52	0	0	47	1.00
968715--968774	7	9.1	7	78	10	56	1	55	3	40	1.27
969494--969549	26	2.1	27	87	12	80	64	0	0	35	0.94
969507--969558	20	2.6	19	76	8	59	57	0	0	42	0.98
969632--969690	27	2.1	29	81	12	70	44	0	1	54	1.10
969662--969715	23	2.5	22	75	6	56	40	0	1	57	1.09
969651--969787	47	2.8	50	71	18	126	43	0	0	55	1.10
969719--969756	18	2.1	18	85	9	51	47	0	0	52	1.00
973777--973808	3	10.7	3	100	0	64	31	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
980567--980611	19	2.3	19	84	3	54	60	2	2	35	1.22
982498--982533	8	4.5	8	86	13	56	11	0	0	88	0.50
982498--982533	16	2.2	17	95	5	65	11	0	0	88	0.50
983132--983220	35	2.5	36	83	9	119	20	28	5	46	1.73
983189--983234	22	2.1	22	92	4	76	17	19	4	58	1.55
983211--983277	35	1.9	35	85	8	93	17	19	5	56	1.61
983306--983385	18	4.7	16	73	17	56	22	1	5	71	1.13
990292--990356	28	2.3	28	91	0	112	32	10	18	38	1.85
991062--991177	57	2.0	57	98	0	223	30	12	18	37	1.89
991703--991748	16	2.9	16	80	9	58	15	13	21	50	1.78

Tables:   1   2   3   4   5   6   7   8   9