genome.fa.s81.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold81
Parameters: 2 7 7 80 10 50 1000
Length:  1151237

Tables:   1   2   3   4   5   6   7   8   9   

This is table  6  of  9  ( 1060 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
682376--682405	11	2.7	11	94	0	51	40	0	0	60	0.97
682618--682657	20	2.0	21	85	5	55	62	0	2	35	1.09
682750--682788	19	2.1	18	95	4	69	66	0	5	28	1.12
683391--683545	43	3.5	44	72	20	119	57	0	1	40	1.15
683421--683539	18	6.7	19	72	19	64	57	0	2	39	1.18
683468--683517	15	3.2	16	76	23	61	58	0	0	42	0.98
683404--683542	31	4.5	31	75	18	103	56	0	2	40	1.16
683463--683534	32	2.2	32	83	11	85	58	0	1	40	1.07
683391--683547	30	5.1	30	72	16	101	57	0	1	40	1.14
683717--683795	26	3.0	25	83	8	95	56	2	0	40	1.12
684873--684939	33	2.0	35	82	5	84	70	7	1	20	1.20
684897--685003	11	8.9	11	72	23	65	64	1	1	31	1.15
685495--685623	65	2.0	65	93	0	222	37	21	13	27	1.90
685643--685668	9	2.9	9	100	0	52	23	0	0	76	0.78
685665--685700	19	2.0	19	89	10	58	61	0	0	38	0.96
685692--685771	35	2.3	33	77	10	79	35	2	1	61	1.18
686111--686159	18	2.6	18	84	15	64	55	0	0	44	0.99
686150--686191	17	2.5	17	81	11	52	57	2	0	40	1.12
688647--688684	16	2.5	15	84	12	51	57	0	0	42	0.98
688651--688684	16	2.2	16	89	5	52	55	0	0	44	0.99
689461--689511	23	2.3	23	96	3	95	49	0	0	50	1.00
689461--689519	23	2.6	23	89	5	75	47	0	3	49	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
689795--689827	14	2.4	14	90	10	50	63	0	0	36	0.95
690126--690187	23	2.7	23	76	2	61	51	0	0	48	1.00
690412--690462	19	2.7	20	78	9	61	49	1	0	49	1.12
690900--690936	3	12.3	3	100	0	74	35	0	0	64	0.94
691436--691473	2	19.0	2	100	0	76	50	0	0	50	1.00
692460--692524	16	3.9	17	76	15	55	67	1	1	29	1.09
692496--692534	19	2.2	16	86	13	51	69	0	5	25	1.09
693195--693233	19	2.0	20	90	5	62	41	0	0	58	0.98
693607--693634	2	14.0	2	100	0	56	50	0	0	50	1.00
694396--694428	14	2.4	14	90	5	50	33	3	0	63	1.10
694974--695011	16	2.4	16	86	4	51	52	21	10	15	1.72
696034--696090	28	2.0	30	86	6	82	56	1	0	42	1.10
696029--696097	28	2.4	27	76	18	68	56	1	0	42	1.08
696442--696468	4	6.8	4	100	0	54	25	0	0	74	0.83
698068--698120	19	2.8	19	80	8	63	60	0	0	39	0.97
698758--698789	2	16.0	2	100	0	64	50	0	0	50	1.00
699629--699687	27	2.1	30	81	9	70	35	6	3	54	1.44
699768--699858	45	2.0	46	95	2	166	53	4	18	23	1.62
699883--699916	17	1.9	18	88	5	52	73	0	0	26	0.83
701679--701776	32	2.9	34	75	14	87	60	3	2	34	1.24
701728--701808	19	4.1	20	78	10	76	58	1	0	40	1.06
702355--702387	17	1.9	17	93	0	57	36	0	0	63	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
702858--702899	22	2.0	22	90	4	68	54	0	0	45	0.99
703030--703059	15	1.9	16	93	6	53	23	3	0	73	0.98
703664--703693	2	15.0	2	100	0	60	50	0	0	50	1.00
704396--704422	4	6.8	4	100	0	54	48	0	0	51	1.00
705066--705133	17	3.9	17	71	26	54	41	0	2	55	1.15
705068--705146	32	2.4	33	87	4	106	37	0	3	58	1.16
706313--706342	2	15.0	2	92	0	51	50	3	0	46	1.18
708332--708633	146	2.0	150	86	6	420	27	12	25	34	1.93
708720--708769	16	3.1	16	78	16	57	28	0	2	70	0.99
708723--708769	17	2.8	17	78	15	53	29	0	2	68	1.02
708963--709010	19	2.4	20	89	6	71	54	0	0	45	0.99
708971--709040	23	3.0	25	78	12	69	50	0	0	50	1.00
709775--709815	17	2.3	18	80	12	50	68	0	0	31	0.90
710725--710755	2	15.5	2	100	0	62	0	51	0	48	1.00
711002--711042	19	2.1	20	86	4	57	34	0	0	65	0.93
711009--711059	19	2.9	17	86	13	68	29	0	0	70	0.87
711780--711872	23	4.3	23	75	16	67	38	2	0	59	1.10
711814--711868	21	2.5	22	85	11	69	45	3	0	50	1.19
714608--714650	22	2.0	22	86	9	61	39	2	0	58	1.11
714666--714702	3	12.3	3	100	0	74	32	0	0	67	0.91
717168--717214	21	2.3	21	83	16	64	34	4	0	61	1.15
718060--718105	22	2.1	22	84	11	60	60	0	0	39	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
718087--718121	12	3.0	12	91	4	54	71	0	0	28	0.86
718074--718122	26	1.9	25	87	4	71	69	0	0	30	0.89
720793--720817	2	12.5	2	100	0	50	52	0	0	48	1.00
723448--723511	31	2.1	31	96	0	119	32	3	17	46	1.63
726854--726902	20	2.5	19	80	12	55	26	2	4	67	1.19
727548--727653	31	3.5	30	80	15	103	58	1	0	39	1.09
727606--727685	24	3.2	24	75	18	58	55	1	0	43	1.08
727564--727670	31	3.4	32	81	12	107	59	1	0	38	1.08
727974--728016	19	2.3	19	88	4	61	39	0	0	60	0.97
727946--728033	33	2.5	35	77	18	94	42	2	1	54	1.20
728219--728268	22	2.3	22	86	10	68	50	0	0	50	1.00
731144--731177	17	2.0	17	88	0	50	55	8	8	26	1.59
732829--732867	21	1.9	20	94	5	69	35	15	12	35	1.86
737642--737678	19	1.9	19	94	0	65	32	2	2	62	1.23
737651--737696	19	2.4	19	85	7	58	32	2	2	63	1.19
737661--737749	23	3.8	23	78	8	83	35	1	1	61	1.11
737661--737736	24	3.3	23	83	12	93	36	1	1	60	1.13
737710--737759	26	1.9	26	84	8	66	34	0	2	64	1.05
737661--737760	51	2.1	46	81	9	110	38	1	1	60	1.11
741368--741422	20	2.6	22	77	16	62	56	3	0	40	1.17
741353--741411	19	3.1	19	75	13	59	61	3	0	35	1.13
741879--741943	24	2.6	25	77	20	73	64	0	0	35	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
741893--741956	24	2.7	23	86	11	78	59	0	1	39	1.07
741907--741956	23	2.2	21	83	13	64	60	0	2	38	1.09
742218--742259	14	2.9	14	83	16	59	50	0	0	50	1.00
742216--742266	13	3.5	14	82	15	59	52	1	0	45	1.12
742900--742925	10	2.6	10	100	0	52	7	19	0	73	1.07
748980--749035	17	3.0	19	82	10	71	41	0	0	58	0.98
749312--749364	16	3.3	17	73	19	51	47	0	1	50	1.12
749295--749351	16	3.2	18	76	16	57	49	0	0	50	1.00
749309--749372	32	2.0	33	84	9	87	50	0	1	48	1.10
749369--749412	17	2.6	18	82	10	56	43	2	0	54	1.12
749609--749715	21	5.3	20	72	23	84	57	1	0	41	1.10
749589--749666	22	3.4	23	76	15	74	53	0	0	46	1.00
749626--749712	27	3.1	28	75	16	74	57	2	0	40	1.11
749609--749677	20	3.3	21	81	4	68	56	1	0	42	1.08
749651--749698	24	2.0	25	91	4	80	58	4	0	37	1.18
749897--749928	17	1.9	17	93	6	57	68	0	0	31	0.90
749902--749943	20	2.2	19	83	12	50	64	0	2	33	1.07
749928--749963	17	2.2	17	90	5	56	47	0	2	50	1.15
750285--750333	25	2.0	24	88	4	71	48	0	0	51	1.00
751328--751726	219	1.8	218	81	4	498	22	10	20	46	1.81
754818--755064	83	3.0	83	97	0	467	15	17	13	53	1.73
756641--756668	9	3.1	9	100	0	56	32	21	14	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
757687--757743	14	4.2	14	80	6	55	38	1	0	59	1.08
758160--758193	17	1.9	17	88	5	50	41	0	0	58	0.98
758446--758569	61	2.0	61	93	0	212	39	3	9	47	1.53
758674--758724	14	3.5	14	75	17	50	41	5	1	50	1.37
758937--759130	95	2.0	95	96	0	361	35	3	7	53	1.46
758937--759170	95	2.5	95	88	4	278	37	3	7	51	1.48
759174--759225	17	3.0	18	83	8	63	63	0	0	36	0.95
759160--759230	31	2.3	30	81	11	81	66	0	0	33	0.92
759176--759245	18	4.2	17	77	17	67	64	0	0	35	0.94
759204--759256	18	3.0	18	89	8	74	60	0	0	39	0.97

Tables:   1   2   3   4   5   6   7   8   9