genome.fa.s83.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold83
Parameters: 2 7 7 80 10 50 1000
Length:  1211110

Tables:   1   2   3   4   5   6   7   8   

This is table  3  of  8  ( 847 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
353813--353883	12	6.2	11	73	16	56	47	0	4	47	1.21
354238--356715	413	6.0	412	98	0	4739	39	13	8	38	1.75
357631--357707	12	6.1	12	77	14	75	55	1	0	42	1.07
357606--357708	24	4.1	24	76	18	88	54	1	0	43	1.11
358935--359011	23	3.2	22	74	18	64	64	1	2	31	1.15
358954--359038	26	3.2	26	75	17	77	65	1	2	30	1.12
358965--359021	13	4.2	14	76	14	57	64	0	3	31	1.10
359811--359852	16	2.5	17	84	7	59	14	16	26	42	1.86
360785--360868	16	5.2	16	75	0	60	34	11	10	42	1.76
360791--360911	32	3.8	31	73	9	109	32	10	10	46	1.73
360791--360910	64	1.9	64	84	6	163	32	10	10	45	1.74
362787--362817	3	10.3	3	100	0	62	67	0	32	0	0.91
367659--367726	11	6.3	11	79	16	79	76	1	20	1	0.94
367684--367722	10	4.0	9	87	12	51	84	0	15	0	0.62
367659--367722	31	2.0	30	85	11	83	78	1	18	1	0.92
367685--367725	21	2.0	21	100	0	82	85	0	14	0	0.60
367659--367726	33	2.1	33	86	8	95	76	1	20	1	0.94
368425--368655	57	4.0	57	82	4	248	25	7	16	50	1.71
368456--368674	58	3.8	58	83	3	253	25	8	16	48	1.75
369106--369130	13	1.9	13	100	0	50	32	16	16	36	1.90
369118--369168	20	2.5	21	87	3	68	39	13	17	29	1.88
369192--369259	33	2.1	32	88	2	100	36	16	11	35	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
376167--376216	21	2.3	21	80	10	57	56	4	18	22	1.58
380108--380146	13	3.0	13	100	0	78	30	15	15	38	1.88
380267--380312	21	2.2	20	81	11	58	32	19	4	43	1.71
382702--382727	13	2.0	13	100	0	52	38	15	15	30	1.88
382684--382747	32	2.0	33	87	3	94	40	17	14	28	1.88
385317--385379	13	4.8	13	90	0	99	30	15	17	36	1.91
385813--385864	20	2.4	21	87	9	70	19	50	26	3	1.65
387241--387283	22	2.0	22	86	9	61	37	2	25	34	1.69
387668--387719	19	2.7	19	87	3	68	42	17	13	26	1.86
393151--393189	13	3.0	13	100	0	78	30	15	15	38	1.88
395770--395795	13	2.0	13	100	0	52	38	15	15	30	1.88
395751--395815	32	2.0	33	87	3	96	41	16	13	27	1.87
397100--397124	13	1.9	13	100	0	50	32	16	16	36	1.90
397112--397164	20	2.6	21	84	3	72	39	15	16	28	1.89
397217--397242	13	2.0	13	100	0	52	30	15	15	38	1.88
397197--397264	33	2.1	32	91	2	109	36	16	13	33	1.87
400569--400598	13	2.3	13	100	0	60	36	13	16	33	1.88
400548--400612	33	2.0	33	87	6	96	33	18	13	33	1.90
400683--400709	13	2.1	13	100	0	54	40	14	14	29	1.86
403209--403280	28	2.6	28	86	0	90	22	19	36	22	1.95
403268--403435	52	3.3	51	83	2	210	31	10	27	30	1.90
403303--403437	51	2.6	52	85	1	182	32	11	27	28	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
403369--403548	80	2.3	80	88	4	258	28	16	29	25	1.96
403501--403578	27	2.9	27	86	5	104	24	17	33	24	1.97
404229--404260	15	2.1	15	100	0	64	25	15	25	34	1.95
406120--406731	55	11.0	54	87	6	748	22	20	29	27	1.99
406120--406731	110	5.5	110	90	5	876	22	20	29	27	1.99
406194--406553	28	13.1	28	59	20	89	20	19	30	28	1.97
407757--407784	11	2.5	11	100	0	56	0	0	7	92	0.37
407742--407791	19	2.6	19	84	12	75	2	4	6	88	0.70
407724--407791	10	6.9	10	75	8	59	1	10	4	83	0.84
420394--420563	52	3.3	51	83	2	214	30	12	28	28	1.93
420495--420674	80	2.3	80	84	4	231	29	16	28	25	1.96
420627--420704	27	2.9	27	84	5	104	25	19	32	23	1.98
420685--420802	51	2.4	49	81	13	136	33	11	23	30	1.91
423164--423189	13	2.0	13	100	0	52	38	15	15	30	1.88
423143--423209	33	2.0	33	88	0	98	43	16	14	25	1.86
423229--423296	19	3.9	18	76	23	83	38	14	11	35	1.83
423251--423275	13	1.9	13	100	0	50	32	16	16	36	1.90
423232--423294	32	2.0	32	96	0	117	36	15	12	34	1.86
423332--423408	21	3.7	21	84	3	93	36	18	11	33	1.87
429800--429865	35	1.9	35	90	3	107	30	21	15	33	1.94
432451--432507	20	2.8	20	86	0	78	29	17	14	38	1.89
432451--432536	20	4.7	19	70	21	58	30	19	13	36	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
432566--432620	19	2.8	20	77	5	67	36	10	18	34	1.86
433386--433427	22	1.9	22	85	0	57	23	30	9	35	1.87
437684--437759	38	2.0	38	100	0	152	36	10	15	36	1.82
441691--441729	20	1.9	21	89	5	62	35	15	12	35	1.86
441711--441825	51	2.3	51	93	0	203	29	17	17	35	1.93
444613--444685	20	3.7	19	85	9	85	30	15	16	38	1.89
446120--446183	29	2.2	29	88	0	92	23	31	7	37	1.83
451351--451409	32	1.9	30	83	13	75	59	10	10	20	1.58
451689--451714	13	2.0	13	100	0	52	30	15	15	38	1.88
451669--451732	32	2.0	33	87	3	94	28	14	17	40	1.88
463070--463121	20	2.6	20	79	11	70	40	11	19	28	1.86
467163--467188	12	2.2	12	100	0	52	15	7	7	69	1.35
467182--467790	79	7.7	79	78	5	498	28	22	12	36	1.90
481548--481692	50	2.9	49	87	5	209	42	9	19	28	1.83
483491--483551	21	2.8	20	79	13	59	4	1	26	67	1.20
484238--484293	24	2.3	25	79	14	64	69	5	1	23	1.18
486074--486126	19	2.7	20	94	2	90	37	16	16	28	1.91
486115--486139	13	1.9	13	100	0	50	32	16	16	36	1.90
486128--486179	20	2.6	20	96	0	95	42	11	15	30	1.82
488452--488634	69	2.7	66	84	11	246	41	13	25	19	1.88
488687--489649	66	14.6	66	77	5	780	46	13	21	18	1.83
488686--489543	198	4.3	198	80	5	919	46	13	21	17	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
489283--489383	32	3.1	32	70	16	107	44	11	23	19	1.84
489431--489604	32	5.2	33	69	15	108	45	14	22	16	1.85
489663--489859	100	2.0	100	79	6	211	46	14	22	15	1.83
489744--490318	66	8.9	65	71	11	378	47	14	20	17	1.82
489457--490318	298	2.8	302	79	7	789	47	13	21	17	1.82
489872--490250	186	2.0	186	81	7	432	48	14	19	17	1.82
490504--490740	40	5.9	40	75	6	160	49	11	17	21	1.78
490512--490694	80	2.3	80	80	3	199	50	12	17	19	1.78
491270--491543	75	3.6	76	78	9	231	43	9	16	29	1.81
491326--491618	151	2.0	146	82	8	351	42	10	18	28	1.83
491937--492107	62	2.8	61	78	4	184	46	16	15	20	1.84
492571--492863	88	3.3	87	79	2	300	46	12	17	23	1.82
494111--494149	16	2.4	16	83	12	53	7	15	0	76	0.99
494093--494157	33	1.9	34	84	12	89	9	15	1	73	1.15
499647--499764	20	5.8	20	78	7	114	38	11	16	33	1.83
499649--499772	41	3.0	41	84	1	151	37	11	16	33	1.85
500530--500622	28	3.1	30	81	9	91	24	16	27	31	1.96
500769--500972	61	3.4	61	89	2	304	20	17	30	30	1.96
500554--500979	28	14.6	28	71	12	261	25	16	28	30	1.97
506897--506973	20	3.8	20	76	10	86	29	15	11	42	1.82
507893--507930	19	2.1	19	85	5	51	23	13	10	52	1.71
519618--519690	16	4.7	15	75	14	58	58	4	1	35	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
519999--520115	21	6.0	20	70	23	81	35	0	1	62	1.06
519922--520031	25	4.2	26	72	17	102	39	0	1	59	1.08
520016--520087	33	2.1	34	89	2	110	30	0	1	68	0.99
520016--520105	23	4.0	23	77	15	82	34	0	1	64	1.01
520047--520114	22	3.1	21	78	12	73	38	0	1	60	1.06
521163--521216	16	3.4	16	84	2	65	53	0	3	42	1.18
521280--521311	16	2.1	16	94	5	57	65	12	3	18	1.38
524332--524387	29	2.0	29	83	10	73	51	1	0	46	1.11
524557--524633	31	2.5	32	83	12	90	45	0	0	54	0.99
524609--524676	19	3.3	21	69	20	54	32	1	1	64	1.11

Tables:   1   2   3   4   5   6   7   8