genome.fa.s87.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold87
Parameters: 2 7 7 80 10 50 1000
Length:  1020132

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 523 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
968719--968768	20	2.5	20	90	3	75	32	14	18	36	1.90
968818--968842	13	1.9	13	100	0	50	36	16	16	32	1.90
968798--968862	33	2.0	32	88	11	96	33	15	18	32	1.92
970860--970905	23	2.0	23	100	0	92	56	17	8	17	1.65
975156--975196	21	1.9	21	85	5	55	26	19	0	53	1.45
976380--976405	13	2.0	13	100	0	52	30	15	15	38	1.88
976360--976423	32	2.0	33	87	3	94	28	15	14	42	1.86
976466--976538	20	3.6	20	81	3	101	31	19	13	35	1.91
976444--976538	41	2.3	42	96	1	174	29	17	12	40	1.87
977144--977189	16	2.8	16	93	6	74	30	39	2	28	1.69
978995--979033	13	3.0	13	96	0	69	35	15	17	30	1.91
979019--979097	20	3.7	20	70	20	70	45	16	12	25	1.82
981112--981142	15	2.1	15	93	0	53	12	22	16	48	1.80
985205--985230	13	2.0	13	100	0	52	30	15	15	38	1.88
985185--985248	32	2.0	33	87	3	94	28	15	14	42	1.86
985291--985363	20	3.6	20	81	3	101	31	19	13	35	1.91
985269--985363	41	2.3	42	96	1	174	29	17	12	40	1.87
985885--985943	21	2.7	23	74	10	61	33	10	23	32	1.88
986526--986550	13	1.9	13	100	0	50	36	16	16	32	1.90
986505--986569	33	2.0	32	88	8	96	32	15	15	36	1.89
988991--989331	56	6.1	57	75	6	234	25	18	14	41	1.88
991421--991462	22	2.1	19	86	13	57	52	0	4	42	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
993384--993585	79	2.6	79	84	3	237	28	16	28	25	1.97
993538--993608	28	2.5	28	86	0	88	22	18	36	22	1.95
993486--993872	159	2.4	158	88	3	553	30	13	27	28	1.94
993756--993888	52	2.6	51	77	3	140	33	11	24	30	1.91
996236--996261	13	2.0	13	100	0	52	38	15	15	30	1.88
996215--996279	34	1.9	33	90	3	103	44	12	16	26	1.83
996305--996356	13	3.5	13	73	26	50	36	17	13	32	1.89
996313--996375	19	3.7	18	74	24	64	36	15	12	34	1.86
996305--996377	32	2.3	32	95	0	128	35	16	12	35	1.86
1002393--1002590	65	3.1	65	79	4	220	40	15	13	29	1.86
1002423--1002648	64	3.5	63	75	11	192	41	14	14	30	1.85
1005642--1005704	32	2.0	32	100	0	126	26	12	15	44	1.83
1009559--1009712	58	2.6	58	82	3	184	45	14	11	29	1.79
1009871--1010035	59	2.9	57	82	3	197	49	12	12	25	1.75
1009894--1010035	57	2.4	59	84	2	180	51	12	12	23	1.74
1010222--1010257	17	2.1	17	100	0	72	30	16	11	41	1.83
1014505--1015039	155	3.5	154	79	6	509	39	19	16	24	1.91
1015905--1016270	131	2.8	131	95	0	633	45	19	13	22	1.85
1016218--1016306	36	2.5	36	96	0	160	48	19	11	21	1.79
1017572--1017620	9	5.3	9	82	4	62	14	0	4	81	0.83
1018583--1018848	62	4.3	61	71	13	188	37	12	24	25	1.90

Tables:   1   2   3   4   5

The End!