Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold94
Parameters: 2 7 7 80 10 50 1000
Length:  2274668

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  13  of  13  ( 1461 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2246374--2246413
3
13.7
3
94
5
73
35
0
0
65
0.93
2247164--2247206
18
2.3
18
88
4
59
58
0
2
39
1.11
2249245--2249300
19
2.9
19
76
12
60
5
23
0
71
1.06
2249857--2249886
2
15.0
2
92
0
51
46
0
3
50
1.18
2251600--2252288
108
6.2
113
74
10
564
34
18
22
24
1.96
2251603--2252075
222
2.1
221
81
5
526
34
17
22
24
1.96
2252525--2252561
19
2.0
18
89
5
56
48
0
0
51
1.00
2252529--2252565
19
1.9
19
88
0
56
51
0
0
48
1.00
2254166--2254206
19
2.1
20
90
4
66
65
7
0
26
1.18
2254898--2254950
17
3.2
17
73
23
51
56
3
0
39
1.17
2254976--2255016
2
20.5
2
100
0
82
51
0
0
48
1.00
2256058--2256138
39
2.0
42
83
7
105
27
2
13
56
1.50
2256058--2256165
16
7.4
15
72
17
68
28
1
12
56
1.47
2256074--2256156
15
5.9
14
71
19
66
27
0
13
59
1.35
2256088--2256154
31
2.1
32
89
8
102
25
0
14
59
1.36
2261980--2262034
29
2.0
28
86
10
78
38
3
1
56
1.28
2264034--2264083
25
2.0
25
100
0
100
28
16
8
48
1.74
2264251--2264288
17
2.2
18
90
4
60
68
0
0
31
0.90
2266997--2267205
50
4.2
50
92
1
330
30
21
17
30
1.96
2271597--2271805
50
4.2
50
93
1
330
29
22
18
29
1.97
2273231--2273267
2
18.5
2
100
0
74
51
0
0
48
1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13

The End!