genome.fa.s94.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold94
Parameters: 2 7 7 80 10 50 1000
Length:  2274668

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  6  of  13  ( 1461 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
914732--914762	2	16.0	2	93	6	55	51	0	0	48	1.00
915311--915341	15	2.1	15	93	0	53	25	9	12	51	1.70
915871--915916	15	3.1	16	81	12	62	19	0	52	28	1.47
915871--915916	10	4.6	10	78	10	58	19	0	52	28	1.47
916214--916314	35	3.0	38	68	28	91	54	0	0	45	0.99
916236--916292	30	1.9	30	85	7	80	56	0	0	43	0.99
916276--916317	19	2.2	19	87	8	59	52	0	0	47	1.00
916460--916496	2	18.5	2	100	0	74	51	0	0	48	1.00
918138--918695	280	2.0	280	91	1	904	34	13	12	39	1.82
919409--919499	45	2.0	45	100	0	182	54	2	4	38	1.32
921108--921156	22	2.2	23	82	10	57	61	8	0	30	1.25
921295--921331	3	12.3	3	100	0	74	67	0	0	32	0.91
922005--922058	24	2.3	25	78	18	62	68	7	1	22	1.24
922756--922782	2	13.5	2	100	0	54	48	0	0	51	1.00
923854--923891	2	19.0	2	100	0	76	50	0	0	50	1.00
924174--924207	17	1.9	18	94	5	61	0	50	0	50	1.00
924707--924745	20	2.0	21	85	10	55	20	7	2	69	1.26
928776--928854	40	2.0	40	87	0	113	37	2	0	59	1.11
928773--928835	28	2.2	28	77	8	65	38	1	0	60	1.07
928984--929018	15	2.2	16	90	5	54	57	5	5	31	1.46
929011--929044	11	3.2	11	87	8	52	58	2	0	38	1.13
929866--929915	14	3.7	13	78	19	57	2	14	2	82	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
929866--929919	26	2.2	23	83	9	63	1	12	1	83	0.81
929866--929922	13	4.5	13	76	20	50	1	14	1	82	0.83
929866--929922	15	3.8	15	76	0	60	1	14	1	82	0.83
933753--933792	13	3.0	13	85	7	53	27	0	2	70	1.01
933917--934182	142	1.9	134	81	10	313	38	6	7	47	1.56
935432--935472	15	2.5	17	88	7	59	63	2	2	31	1.20
942139--942175	2	18.0	2	94	5	65	48	0	2	48	1.15
943182--943413	120	2.0	116	84	5	304	41	7	10	40	1.68
943462--943505	19	2.4	18	82	14	54	27	0	2	70	0.99
944156--945217	73	14.6	72	83	4	1159	32	1	10	55	1.44
944150--945217	295	3.7	291	90	2	1515	32	1	10	55	1.43
944750--944875	40	3.3	40	69	25	121	31	0	11	57	1.34
944156--945217	218	4.9	217	83	4	1185	32	1	10	55	1.44
945200--945227	6	4.7	6	100	0	56	17	0	0	82	0.68
948787--948819	6	5.5	6	100	0	66	84	0	0	15	0.61
949550--949587	20	1.9	20	94	0	67	34	15	10	39	1.82
956565--956609	23	2.0	23	86	0	63	75	8	11	4	1.17
956621--956659	20	2.0	20	85	5	53	69	10	15	5	1.34
957961--958459	27	18.1	27	84	7	434	25	31	15	28	1.95
957961--958471	55	9.3	56	86	4	499	25	31	15	27	1.95
957935--958498	28	20.4	28	82	9	393	26	31	15	27	1.96
957961--958314	82	4.3	82	86	3	471	24	31	14	29	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
958281--958933	84	7.5	85	81	9	572	28	28	19	22	1.98
958281--958933	56	11.2	56	82	7	562	28	28	19	22	1.98
958316--958898	28	19.9	29	83	7	429	29	29	19	21	1.98
958347--958745	95	4.4	94	83	7	406	30	29	19	21	1.97
958704--958934	28	8.1	28	82	5	214	28	27	19	25	1.98
959040--959198	47	3.4	47	80	6	189	22	28	16	32	1.96
959010--959176	45	3.6	45	80	5	192	23	26	16	32	1.96
959586--959663	20	3.9	20	86	0	120	30	17	14	37	1.90
966316--966454	51	2.7	50	87	5	181	40	12	15	32	1.84
966419--966474	20	2.8	20	88	0	76	37	8	12	41	1.74
967972--968077	41	2.7	39	73	5	113	39	16	4	39	1.69
971472--971526	15	3.6	15	80	4	65	43	0	12	43	1.42
973265--973315	25	2.0	25	100	0	102	23	3	15	56	1.56
973465--973536	21	3.4	21	80	0	81	48	4	18	29	1.66
978968--979007	2	20.0	2	94	0	71	47	2	0	50	1.14
979007--979037	2	15.5	2	100	0	62	51	0	48	0	1.00
982330--982382	25	2.2	23	86	6	70	47	0	9	43	1.36
982469--982541	38	2.0	35	87	12	103	58	0	0	41	0.98
983088--983143	18	3.1	18	71	10	51	33	0	1	64	1.04
983801--983846	20	2.4	20	86	13	62	60	2	0	36	1.09
983813--983866	21	2.7	20	81	13	58	68	0	0	31	0.90
985926--985955	1	30.0	1	93	0	51	0	3	0	96	0.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
988720--988752	2	16.5	2	100	0	66	51	0	0	48	1.00
992815--992881	20	3.3	20	78	0	89	44	11	10	32	1.75
992804--992881	40	2.0	39	92	2	129	44	11	10	33	1.74
993381--994416	29	35.3	29	85	6	1222	21	17	32	28	1.96
993382--994412	57	17.6	56	83	9	1152	21	17	32	28	1.96
995629--995693	1	65.0	1	75	0	58	1	3	7	87	0.70
995629--995692	10	5.9	10	82	12	65	1	3	7	87	0.71
995629--995694	12	5.8	11	82	12	80	1	3	9	86	0.74
1005373--1005419	21	2.2	21	84	0	58	72	4	10	12	1.25
1009648--1009722	20	3.8	19	78	7	87	41	12	13	33	1.81
1009645--1009722	40	2.0	39	89	2	120	41	12	12	33	1.82
1010612--1010647	16	2.2	17	90	5	56	27	0	5	66	1.13
1011349--1011400	26	1.9	28	84	7	72	28	5	5	59	1.44
1012192--1012242	26	2.0	26	88	0	75	33	7	15	43	1.76
1016697--1016773	26	3.0	25	82	3	82	33	9	18	38	1.82
1020060--1020105	16	2.8	17	80	6	58	15	8	23	52	1.70
1020085--1020131	16	2.9	16	87	6	69	14	10	29	44	1.79
1020173--1020245	22	3.3	22	84	0	92	23	10	21	43	1.84
1020173--1020262	22	4.1	22	80	4	85	24	10	22	43	1.83
1020981--1021076	32	2.9	33	81	6	97	17	13	26	42	1.86
1020979--1021075	16	6.0	16	68	6	61	16	13	26	43	1.85
1022647--1022700	20	2.7	20	82	5	65	38	16	11	33	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1024591--1024628	18	2.1	19	90	5	60	71	15	0	13	1.16
1024713--1024768	20	2.9	19	82	10	62	51	1	1	44	1.22
1024954--1024989	16	2.2	16	90	0	54	58	19	8	13	1.61
1024964--1025012	15	3.1	15	88	5	62	44	22	18	14	1.85
1027923--1027976	17	3.1	17	79	12	56	50	1	0	48	1.11
1029503--1029548	20	2.3	21	81	11	60	41	15	10	32	1.82
1032512--1032537	13	2.0	13	100	0	52	38	15	15	30	1.88
1032490--1032557	33	2.1	32	88	2	100	32	11	19	36	1.88
1032598--1032650	20	2.6	21	82	8	65	28	16	16	37	1.91
1033257--1033288	16	2.0	16	93	0	55	40	18	6	34	1.76
1034666--1034706	20	2.0	21	85	9	57	7	31	43	17	1.76
1041382--1041434	20	2.6	21	82	8	65	28	16	16	37	1.91
1041422--1041446	13	1.9	13	100	0	50	36	16	16	32	1.90
1041435--1041490	20	2.8	20	94	0	103	28	14	16	41	1.87
1042604--1042908	58	5.3	59	72	7	207	27	8	14	49	1.72
1042604--1042897	116	2.5	115	79	4	297	27	8	14	49	1.71
1044409--1044441	3	10.7	3	93	6	57	69	0	0	30	0.88
1044535--1044564	15	1.9	16	93	6	53	60	3	16	20	1.50
1044554--1044597	19	2.4	18	85	11	54	75	2	22	0	0.92
1044589--1044613	12	2.1	12	100	0	50	68	0	8	24	1.16
1045615--1045651	3	12.3	3	100	0	74	32	0	0	67	0.91
1045708--1045748	6	6.8	6	97	0	64	21	17	9	51	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1046624--1046660	19	1.9	19	100	0	74	24	10	10	54	1.67
1051017--1051079	21	3.0	19	80	17	63	39	0	3	57	1.15
1051031--1051082	23	2.3	23	80	6	63	48	0	1	50	1.12
1051117--1051161	19	2.5	17	82	7	54	46	4	4	44	1.43
1051390--1051433	19	2.3	20	84	7	65	65	0	0	34	0.93
1051582--1051633	22	2.3	24	77	16	65	44	0	1	53	1.11
1054353--1054426	32	2.5	30	83	14	91	47	0	0	52	1.00
1054390--1054441	16	3.1	17	72	8	52	42	0	1	55	1.10
1054363--1054441	32	2.4	33	89	6	115	44	0	1	54	1.08
1054374--1054424	16	3.2	16	72	10	59	50	0	0	49	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13