genome.fa.s95.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold95
Parameters: 2 7 7 80 10 50 1000
Length:  582947

Tables:   1   2   3   4   5   6   

This is table  2  of  6  ( 646 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90801--90835	17	2.0	18	88	5	54	54	0	2	42	1.15
91912--91953	13	3.2	13	83	6	50	64	0	2	33	1.07
91912--91967	18	3.1	18	82	14	71	62	0	3	33	1.12
92057--92097	21	2.0	21	90	9	66	63	0	2	34	1.08
92274--92352	28	2.9	27	78	12	81	53	1	3	41	1.27
92557--92615	28	2.1	28	90	0	91	37	8	3	50	1.49
93002--93030	2	14.5	2	100	0	58	48	0	0	51	1.00
93643--93687	20	2.4	18	85	7	63	48	0	0	51	1.00
93643--93688	19	2.4	18	82	7	56	47	0	0	52	1.00
94260--94305	16	2.6	18	76	10	51	28	4	6	60	1.40
94831--94883	13	4.3	13	79	15	51	62	0	5	32	1.19
95172--95212	17	2.3	18	76	20	50	51	0	0	48	1.00
95932--95960	2	14.5	2	100	0	58	48	0	0	51	1.00
96554--96593	19	2.2	18	86	4	53	37	0	0	62	0.95
97144--97215	23	3.0	24	78	6	67	36	4	1	58	1.26
97532--97587	22	2.5	21	81	16	60	28	5	1	64	1.26
97605--97664	17	3.4	17	76	6	57	55	6	0	38	1.27
97605--97664	19	3.3	19	75	11	63	55	6	0	38	1.27
97833--97885	26	2.1	25	85	3	70	33	0	1	64	1.05
97846--97886	17	2.4	18	88	12	68	31	0	0	68	0.90
98264--98298	18	1.9	18	88	0	52	42	2	8	45	1.49
98887--98941	2	27.5	2	88	0	83	43	0	5	50	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98992--99030	21	2.0	21	90	10	64	53	0	2	43	1.14
99617--99681	31	2.1	31	91	0	103	35	9	10	44	1.71
102133--102172	3	13.3	3	100	0	80	32	0	0	67	0.91
102370--102588	120	1.8	119	83	4	289	44	8	5	41	1.58
102550--102627	39	2.0	39	97	0	147	48	1	0	50	1.09
103989--104048	32	1.9	30	86	6	84	48	0	0	51	1.00
104662--105787	332	3.4	329	82	5	1271	34	11	12	40	1.80
104662--105820	168	7.0	166	79	7	1171	34	11	12	40	1.80
104692--105783	500	2.2	498	82	6	1320	34	11	12	41	1.80
106278--106339	24	2.5	24	82	7	72	64	11	1	22	1.34
106528--106611	44	1.9	44	85	7	118	55	1	0	42	1.07
106964--107000	19	2.0	18	89	5	56	45	0	0	54	1.00
107194--107248	27	2.0	27	86	6	76	43	5	0	50	1.25
107272--107335	25	2.6	24	78	7	65	42	4	0	53	1.22
109133--109168	2	18.0	2	88	0	54	47	2	2	47	1.31
109327--109388	27	2.6	24	79	18	67	53	0	0	46	1.00
109328--109388	8	7.6	8	77	14	54	54	0	0	45	1.00
109335--109394	27	2.2	29	80	19	85	53	0	0	46	1.00
109356--109406	22	2.2	23	83	13	61	62	0	0	37	0.95
109577--109619	12	3.8	11	82	11	52	32	0	0	67	0.91
109586--109632	22	2.1	22	85	14	62	38	0	0	61	0.96
109586--109632	21	2.1	23	85	14	64	38	0	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
109588--109701	53	2.1	54	79	10	119	49	0	0	50	1.00
109918--110026	16	6.5	16	78	14	112	39	1	1	56	1.20
109918--110026	32	3.2	32	80	14	130	39	1	1	56	1.20
109922--110026	38	2.9	38	69	21	100	40	1	1	56	1.21
110062--110126	29	2.2	28	81	10	76	50	4	4	40	1.43
110910--110951	22	2.0	22	86	13	61	40	2	0	57	1.12
111715--111798	25	3.3	24	73	9	69	58	1	2	38	1.19
112370--112423	25	2.3	22	84	9	63	29	0	1	68	1.00
112378--112416	20	2.0	19	85	5	51	30	0	2	66	1.05
112370--112424	11	4.7	12	73	10	51	29	0	1	69	0.99
113192--113225	18	2.0	17	88	11	52	64	2	0	32	1.08
113823--113875	23	2.2	24	77	9	56	39	1	3	54	1.29
115116--115200	13	6.2	13	71	16	64	55	1	0	43	1.07
115359--115423	23	2.8	24	79	15	73	55	0	0	44	0.99
115414--115491	33	2.4	32	87	8	104	53	0	1	44	1.08
115690--115742	19	2.9	19	80	5	56	45	0	0	54	0.99
115702--115755	19	2.8	19	88	0	72	37	0	0	62	0.95
115699--115773	24	3.2	23	77	5	78	40	0	0	60	0.97
115903--115936	15	2.3	15	90	10	52	47	0	0	52	1.00
115958--116012	22	2.6	22	76	21	64	56	0	0	43	0.99
116920--116955	16	2.1	18	90	10	58	25	0	19	55	1.43
117087--117345	123	2.1	123	83	1	349	24	27	21	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
117102--117381	123	2.3	123	82	2	303	25	27	22	25	2.00
120817--120880	27	2.3	27	79	15	76	43	0	3	53	1.16
121296--121336	10	4.6	9	82	17	50	63	2	0	34	1.08
121296--121354	26	2.3	25	85	11	75	62	1	0	35	1.05
121306--121389	31	2.7	31	80	7	91	66	0	0	33	0.92
121313--121391	17	4.9	17	83	10	87	65	0	0	34	0.93
121306--121390	16	5.4	16	83	4	93	67	0	0	32	0.91
121716--122254	192	2.9	189	88	6	810	30	21	32	15	1.94
121705--122239	180	2.9	179	89	4	773	30	23	31	14	1.95
128532--128630	51	1.9	51	95	0	180	28	20	12	39	1.88
133850--133895	24	1.9	24	86	0	65	41	28	6	23	1.79
133890--133953	28	2.3	28	91	5	103	53	20	7	18	1.69
133900--133954	28	2.0	28	100	0	110	49	21	10	18	1.78
135858--135903	21	2.1	22	84	4	58	19	30	19	30	1.97
138427--138472	24	1.9	24	90	0	74	39	28	6	26	1.81
138477--138531	28	2.0	28	96	0	101	49	20	10	20	1.78
139266--139340	22	3.1	23	71	28	59	44	0	0	56	0.99
139271--139337	20	3.2	21	73	22	61	41	0	0	58	0.98
139274--139337	22	3.1	20	76	24	62	42	0	0	57	0.98
140292--141142	290	2.9	291	80	6	1024	26	12	23	37	1.90
141951--142112	82	2.0	82	87	4	238	24	22	19	33	1.97
142472--142540	34	2.0	34	100	0	138	33	5	17	43	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
144529--144571	20	2.2	20	84	8	54	41	2	0	55	1.12
144829--144915	30	2.8	30	77	6	86	34	4	2	58	1.31
146313--146467	79	2.0	79	90	0	247	34	18	17	29	1.94
152829--152911	33	2.5	33	79	12	91	46	0	0	53	1.00
153662--153702	22	1.9	21	85	5	55	51	4	0	43	1.23
155008--155037	2	15.0	2	100	0	60	0	50	0	50	1.00
155037--155065	2	14.5	2	100	0	58	48	0	0	51	1.00
157112--157152	2	21.0	2	95	5	75	48	0	0	51	1.00
165503--165527	2	12.5	2	100	0	50	48	0	0	52	1.00
170626--170668	21	2.0	21	91	8	70	37	0	0	62	0.95
172558--172604	20	2.2	22	85	14	64	48	0	2	48	1.13
172833--172911	37	2.1	37	83	4	97	46	0	0	53	1.00
172880--173224	169	2.0	169	84	8	445	44	10	8	37	1.69
173495--173558	28	2.2	28	78	8	67	53	0	0	46	1.00
173776--173822	3	15.7	3	100	0	94	31	0	0	68	0.90
174231--174281	18	2.7	19	81	6	59	68	0	1	29	1.00
174231--174281	10	5.1	10	75	15	52	68	0	1	29	1.00
174268--174326	27	2.2	27	82	11	68	47	8	1	42	1.44
175216--175266	26	1.9	27	84	11	70	68	0	1	29	1.00
176580--176604	11	2.3	11	100	0	50	36	12	0	52	1.39
177136--177182	22	2.1	23	88	11	71	61	0	0	38	0.96
177334--177373	12	3.0	14	78	14	57	25	0	2	72	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
180439--180530	24	3.8	23	74	14	78	43	0	1	55	1.07
180470--180507	19	2.0	20	84	5	51	44	0	0	55	0.99
180513--180552	21	1.9	21	90	10	64	60	0	0	40	0.97
180768--180810	20	2.0	22	82	8	54	58	0	4	37	1.19
182551--182633	30	2.8	30	85	1	96	28	3	6	61	1.37
185289--185322	17	2.0	17	88	0	50	70	0	0	29	0.87
186429--186474	21	2.2	20	81	11	56	50	4	23	21	1.67
189514--189563	15	3.5	15	74	20	61	36	24	8	32	1.84
189513--189569	28	2.0	28	100	0	114	35	21	12	31	1.90
190997--191042	22	2.2	20	88	7	65	43	0	0	56	0.99

Tables:   1   2   3   4   5   6