genome.fa.s95.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold95
Parameters: 2 7 7 80 10 50 1000
Length:  582947

Tables:   1   2   3   4   5   6   

This is table  5  of  6  ( 646 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
430851--430892	17	2.6	16	81	7	57	35	0	0	64	0.94
430847--430905	26	2.2	27	75	6	66	37	0	0	62	0.95
432250--432316	12	5.4	13	84	12	79	32	0	0	67	0.91
432250--432316	18	3.5	19	82	13	84	32	0	0	67	0.91
432261--432317	13	4.4	13	76	14	64	33	0	0	66	0.92
432499--432529	2	15.5	2	100	0	62	0	51	0	48	1.00
433141--433192	2	26.0	2	92	0	86	48	1	0	50	1.12
438792--438858	20	3.4	20	70	15	59	40	2	0	56	1.14
457273--457357	37	2.3	37	97	0	161	25	14	15	44	1.84
457473--457876	39	8.8	47	72	14	254	25	24	18	30	1.98
457473--457732	87	2.9	87	90	2	385	25	24	20	29	1.99
457698--457878	92	2.0	92	86	2	256	25	24	17	33	1.96
457559--457925	144	2.6	139	75	8	341	26	24	17	31	1.97
458718--458772	20	2.8	20	88	5	76	32	14	12	40	1.84
462353--462391	18	2.1	19	95	4	71	43	23	0	33	1.54
462562--463114	28	19.1	29	83	6	608	29	28	16	25	1.96
462572--463109	201	2.7	199	84	5	677	29	28	16	24	1.96
463972--464114	51	2.8	51	92	2	225	27	20	10	41	1.85
468000--468054	28	2.0	28	92	0	92	61	3	1	32	1.24
468452--468476	9	2.8	9	100	0	50	36	0	0	64	0.94
468971--469009	14	2.9	14	84	3	53	58	0	0	41	0.98
469033--469088	18	3.0	18	74	12	51	75	5	0	19	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
470453--470485	17	1.9	17	88	11	50	69	0	6	24	1.10
470717--470821	44	2.4	42	75	17	106	50	0	0	49	1.00
480173--480211	2	19.5	2	100	0	78	0	48	0	51	1.00
480370--480452	28	3.1	27	83	11	91	50	0	1	48	1.08
480366--480438	30	2.5	31	83	14	86	49	0	0	50	1.00
480793--480838	12	3.6	13	77	14	51	32	0	0	67	0.91
480887--480927	20	2.1	19	86	4	55	56	4	2	36	1.34
480893--480944	20	2.6	19	81	6	59	55	1	0	42	1.10
481691--481724	16	2.2	16	89	5	52	26	2	8	61	1.40
483098--483209	18	6.3	18	67	15	54	42	0	0	56	1.05
483140--483180	15	3.0	14	83	16	59	51	0	0	48	1.00
483147--483224	21	3.9	21	76	15	76	44	0	0	55	0.99
483154--483219	20	3.2	20	78	10	71	45	0	0	54	0.99
484043--484329	96	3.0	95	87	2	396	38	18	18	24	1.93
486843--486892	27	1.9	27	88	8	77	52	0	0	48	1.00
488153--488197	15	2.9	15	87	9	56	48	0	2	48	1.13
488305--488375	36	2.0	36	83	10	92	50	4	4	40	1.41
488638--488693	20	2.8	20	84	13	78	55	3	0	41	1.17
488826--488910	40	2.2	39	81	8	102	44	1	0	54	1.07
488837--488908	32	2.2	33	87	2	101	45	1	0	52	1.09
493668--493696	2	14.5	2	100	0	58	51	0	0	48	1.00
494117--494329	108	2.0	108	94	0	372	30	22	17	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
496917--496950	2	17.0	2	100	0	68	50	0	0	50	1.00
497616--498052	158	2.9	153	82	6	521	31	11	24	32	1.91
498365--498450	30	2.8	31	80	3	93	52	0	0	47	1.00
498630--498664	18	2.0	18	88	5	54	48	0	2	48	1.16
498772--498801	15	1.9	16	93	6	53	13	0	3	83	0.77
500564--500639	27	2.7	28	82	13	86	56	1	5	36	1.30
501234--501289	17	3.2	16	79	20	60	48	0	0	51	1.00
501249--501290	18	2.3	19	88	12	61	42	0	0	57	0.99
501390--501433	20	2.2	20	84	4	54	31	2	2	63	1.19
501719--501747	14	2.0	15	93	6	51	48	0	0	51	1.00
502006--502040	3	11.7	3	100	0	70	34	0	0	65	0.93
502759--502839	36	2.3	37	79	10	89	53	0	0	46	1.00
502941--502966	5	5.2	5	100	0	52	80	0	0	19	0.71
503229--503274	17	2.8	17	75	18	53	56	0	0	43	0.99
503292--503354	26	2.4	26	81	5	74	46	3	1	49	1.27
503774--503816	21	2.0	22	86	4	61	23	2	4	69	1.18
507436--507887	248	1.8	248	97	0	852	41	7	4	46	1.53
508047--508105	12	4.9	12	70	15	50	50	1	0	47	1.11
508126--508168	23	1.9	22	85	4	59	51	4	0	44	1.22
508149--508191	17	2.7	15	86	10	59	55	0	0	44	0.99
508337--508405	22	3.1	22	76	12	54	57	0	1	40	1.07
508348--508390	16	2.8	16	89	3	61	62	0	0	37	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
508465--508511	24	2.0	24	87	8	69	61	0	0	38	0.96
508979--509044	26	2.5	28	76	14	68	53	0	0	46	1.00
509017--509072	16	3.2	16	79	16	58	66	0	0	33	0.92
509095--509137	3	14.3	3	95	0	77	34	2	0	62	1.08
509194--509252	16	3.8	16	80	8	59	44	0	0	55	0.99
509200--509246	14	3.3	14	77	13	51	42	0	0	57	0.98
509919--509993	18	3.9	20	71	22	63	60	0	0	40	0.97
509913--510028	58	2.0	58	88	9	175	57	0	0	42	0.98
509978--510023	24	2.0	22	87	8	65	56	0	0	43	0.99
510287--510348	18	3.5	18	76	14	67	51	1	0	46	1.10
510262--510342	34	2.5	31	84	11	101	54	2	0	43	1.13
510288--510358	19	3.8	19	74	3	65	50	1	0	47	1.09
513336--513526	10	20.2	10	65	26	55	39	0	0	59	1.06
513434--513509	25	2.9	24	76	17	71	40	0	0	59	0.98
513407--513488	29	2.7	31	78	17	93	39	1	0	59	1.05
513451--513532	39	2.1	39	84	8	105	39	0	0	60	0.96
513359--513524	14	11.6	15	66	20	72	37	0	0	60	1.06
513463--513537	20	4.0	19	71	21	52	38	0	0	61	0.96
513349--513539	27	7.0	28	67	21	104	39	0	0	59	1.05
513515--513549	15	2.3	15	95	0	61	45	0	0	54	0.99
513983--514072	18	4.9	18	73	9	65	61	2	0	36	1.09
515075--515111	12	2.7	14	80	20	51	35	2	0	62	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
515040--515103	31	2.0	32	87	3	94	35	1	3	59	1.23
515159--515206	20	2.3	21	82	3	62	56	2	0	41	1.11
515188--515225	20	1.9	20	89	10	60	57	2	0	39	1.12
515798--515839	20	2.1	20	86	8	59	64	0	0	35	0.94
515789--515857	25	2.7	24	78	10	75	57	0	1	40	1.07
516040--516089	19	2.4	20	83	12	57	40	0	0	60	0.97
516893--516961	33	2.1	33	91	0	111	49	1	1	47	1.19
516963--517038	18	4.2	18	68	19	59	60	0	2	36	1.11
517258--517322	29	2.3	27	76	5	67	52	0	0	47	1.00
517810--517905	15	6.3	15	71	15	54	61	1	0	37	1.03
517864--517945	8	9.9	8	72	16	51	64	1	0	34	1.01
517907--517954	11	4.8	10	80	17	55	62	0	0	37	0.95
517908--517960	27	2.0	27	85	7	72	62	0	0	37	0.96
517864--517950	23	3.8	22	73	14	70	64	1	0	34	1.01
518240--518322	39	2.2	36	83	14	98	55	0	0	44	0.99
518492--518527	16	2.2	16	95	0	63	41	0	8	50	1.33
519311--519358	18	2.9	16	73	11	51	60	0	0	39	0.97
520410--520465	23	2.4	23	81	0	67	48	0	0	51	1.00
520976--521019	18	2.4	19	81	11	56	72	0	2	25	0.96
521253--521284	11	2.6	13	80	19	50	43	0	0	56	0.99
522108--522169	27	2.2	28	80	8	74	66	3	3	27	1.23
523729--523759	16	1.9	16	93	0	53	70	0	6	22	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
524806--524848	15	2.9	14	83	13	50	48	2	0	48	1.14
527116--527250	66	2.0	66	88	2	200	42	11	27	18	1.84
527362--528282	281	3.2	282	82	9	1100	31	16	20	31	1.95
528912--529037	65	1.9	67	96	3	238	33	22	14	30	1.93
529706--529763	21	2.5	23	79	20	68	41	0	0	58	0.98
529724--529771	24	2.1	23	85	11	64	43	0	0	56	0.99
530148--530180	14	2.4	14	90	10	50	39	0	0	60	0.97
530696--530796	40	2.5	39	84	4	114	42	9	0	46	1.43
530718--530797	40	2.0	40	87	0	115	43	10	1	45	1.45
530976--531008	6	5.5	6	89	10	50	51	0	0	48	1.00

Tables:   1   2   3   4   5   6