genome.fa.s95.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold95
Parameters: 2 7 7 80 10 50 1000
Length:  582947

Tables:   1   2   3   4   5   6   

This is table  4  of  6  ( 646 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
306321--306397	8	8.2	10	68	23	51	40	1	0	58	1.06
306610--306672	26	2.4	27	86	5	92	58	1	1	38	1.17
315668--315693	4	6.5	4	100	0	52	23	0	0	76	0.78
316011--316059	23	2.0	23	85	14	64	57	0	0	42	0.99
316235--316274	19	2.1	19	100	0	80	55	0	25	20	1.44
316326--316365	19	2.2	18	86	4	53	32	0	2	65	1.06
317342--317371	6	5.0	6	95	0	51	53	0	33	13	1.40
319847--319875	15	1.9	15	100	0	58	34	31	0	34	1.58
320700--320748	21	2.5	19	78	15	55	57	0	2	40	1.10
321191--321250	2	30.0	2	100	0	120	50	0	0	50	1.00
321259--321317	23	2.5	24	86	8	77	64	0	3	32	1.10
321319--321374	17	3.4	18	72	22	52	48	0	0	51	1.00
321655--321716	27	2.3	26	81	10	72	50	1	3	45	1.27
321666--321727	27	2.4	28	86	10	87	41	1	3	53	1.27
321710--321780	17	4.2	17	75	13	67	49	0	1	49	1.09
321721--321795	23	3.3	23	72	12	64	49	0	1	49	1.09
321892--321976	15	6.1	15	74	20	53	42	0	0	57	0.98
321938--322007	6	11.8	6	73	14	56	34	0	0	65	0.93
321940--322011	24	3.0	24	80	8	92	37	0	0	62	0.95
321916--321998	37	2.2	38	87	8	125	34	0	0	65	0.93
321916--322007	12	7.4	13	76	17	81	35	0	0	64	0.94
321905--322011	48	2.3	46	83	3	133	39	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
322441--322479	11	3.6	11	82	6	53	23	0	2	74	0.94
322441--322485	21	2.0	22	87	8	65	24	0	4	71	1.05
322863--322939	31	2.5	30	83	10	93	42	0	1	55	1.07
322895--322964	19	3.5	19	78	14	61	38	0	0	61	0.96
322881--322974	41	2.3	41	81	5	109	39	0	0	60	0.97
322965--323002	20	1.9	20	88	0	58	47	0	0	52	1.00
323070--323108	2	19.5	2	100	0	78	51	0	0	48	1.00
326360--326404	20	2.1	22	88	12	67	73	0	0	26	0.84
327955--328018	32	1.9	34	84	6	87	35	3	12	48	1.57
329469--329499	2	15.5	2	100	0	62	51	0	0	48	1.00
329805--329923	53	2.2	54	83	7	154	37	2	8	51	1.46
330100--330138	17	2.2	18	86	13	55	43	7	5	43	1.55
330891--330944	20	2.7	20	88	0	72	35	7	14	42	1.74
333129--333334	97	2.1	97	86	1	297	29	26	12	31	1.93
334610--334651	22	1.9	22	90	9	68	61	0	0	38	0.96
347968--348011	22	2.0	22	86	8	63	38	0	4	56	1.20
348072--348114	21	2.0	21	86	0	59	41	0	4	53	1.21
347911--348216	103	3.0	103	91	5	478	41	6	6	45	1.56
354791--354874	41	2.0	42	95	2	152	40	14	11	33	1.82
358369--358417	23	2.0	23	85	14	64	57	0	0	42	0.99
358592--358630	18	2.1	19	95	4	71	53	0	25	20	1.45
359704--359733	6	5.0	6	95	0	51	53	0	33	13	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
363042--363090	21	2.5	19	78	15	55	57	0	2	40	1.10
363555--363603	24	2.0	26	92	8	84	65	0	4	30	1.11
363616--363671	17	3.4	18	72	22	52	50	0	0	50	1.00
363956--364017	27	2.3	26	81	10	72	50	1	3	45	1.27
363967--364028	27	2.4	28	86	10	87	41	1	3	53	1.27
364011--364081	17	4.2	17	75	13	67	49	0	1	49	1.09
364229--364307	23	3.4	24	75	15	85	32	0	1	65	1.00
364230--364307	12	6.8	11	76	12	77	32	0	1	66	1.00
364218--364297	35	2.2	36	84	10	110	33	0	1	65	1.01
364738--364776	11	3.6	11	82	6	53	23	0	2	74	0.94
364738--364782	21	2.0	22	87	8	65	24	0	4	71	1.05
364919--364972	21	2.5	20	77	14	54	51	0	0	48	1.00
365160--365236	31	2.5	30	83	10	93	42	0	1	55	1.07
365192--365261	19	3.5	19	78	14	61	38	0	0	61	0.96
365178--365271	41	2.3	41	81	5	109	39	0	0	60	0.97
365262--365301	20	2.0	20	90	0	62	50	0	0	50	1.00
366634--366711	28	2.9	28	83	7	90	23	5	21	50	1.69
366669--366737	24	2.8	24	82	4	75	21	5	26	46	1.74
369261--369306	21	2.1	22	84	4	58	30	19	30	19	1.97
371210--371260	26	1.9	27	88	4	77	27	1	21	49	1.60
375170--375233	32	1.9	34	84	6	87	35	3	12	48	1.57
376384--376417	2	17.0	2	100	0	68	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
376746--376776	2	15.5	2	100	0	62	51	0	0	48	1.00
377082--377200	53	2.2	54	83	7	154	37	2	8	51	1.46
377381--377419	17	2.2	18	86	13	55	43	7	5	43	1.55
378173--378226	20	2.7	20	91	0	81	33	7	16	42	1.76
380417--380623	97	2.1	97	86	3	292	29	27	13	30	1.94
381890--381931	22	1.9	22	90	9	68	61	0	0	38	0.96
389406--389437	2	16.0	2	100	0	64	50	0	0	50	1.00
394172--394199	2	14.0	2	100	0	56	50	0	0	50	1.00
395217--395261	22	2.0	23	86	4	65	40	0	4	55	1.20
395160--395471	104	3.0	105	97	1	590	41	5	5	46	1.50
395321--395363	22	1.9	22	85	4	59	44	0	4	51	1.22
395426--395470	22	2.0	23	86	4	65	40	0	4	55	1.20
395634--395670	19	2.0	18	89	5	56	21	0	0	78	0.75
395642--395675	16	2.1	16	89	10	52	23	0	0	76	0.79
395635--395683	25	2.0	25	83	0	62	28	0	0	71	0.86
397197--397236	21	1.9	21	90	10	64	40	0	0	60	0.97
397191--397290	49	2.1	46	83	12	123	53	0	0	47	1.00
397237--397279	20	2.2	20	87	8	61	55	0	0	44	0.99
397249--397310	25	2.5	24	82	15	65	54	0	0	45	0.99
401229--401294	32	2.0	33	82	14	82	42	3	7	46	1.47
406635--406668	2	17.0	2	100	0	68	50	0	0	50	1.00
412032--412072	15	2.7	15	88	3	64	24	51	7	17	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
412032--412068	16	2.4	16	90	4	58	24	48	8	18	1.75
412173--412229	27	2.1	27	83	6	71	28	40	1	29	1.67
413458--413499	20	2.0	20	86	4	57	64	4	0	30	1.14
413939--414203	131	2.0	133	83	9	333	44	6	7	41	1.60
414491--414522	2	16.0	2	100	0	64	50	0	0	50	1.00
414774--414825	2	26.0	2	92	0	86	50	3	0	46	1.20
414768--414824	14	4.1	14	95	0	78	50	7	0	42	1.29
414984--415032	12	3.2	16	70	24	52	38	0	0	61	0.96
417575--417642	19	3.3	21	73	6	59	54	0	0	45	0.99
419035--419085	18	2.9	17	75	11	50	33	3	15	47	1.64
419321--419376	18	2.9	19	84	12	62	53	1	1	42	1.21
419386--419410	10	2.5	10	100	0	50	48	0	0	52	1.00
421119--421156	13	3.0	13	88	3	51	78	0	0	21	0.74
421119--421155	18	2.0	18	89	5	56	78	0	0	21	0.75
421775--421938	72	2.3	72	79	0	166	40	15	15	28	1.87
422378--422443	24	2.8	24	71	0	60	56	0	0	43	0.99
422802--423086	137	2.1	133	82	7	331	43	9	6	40	1.63
423600--423638	2	20.0	2	94	5	71	48	0	0	51	1.00
426902--426943	22	1.9	22	85	0	57	38	0	2	59	1.10
429223--429264	15	2.6	17	88	7	61	64	0	0	35	0.94
429223--429271	17	2.9	17	82	8	57	63	0	0	36	0.95
429474--429535	30	2.3	28	81	15	69	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
429487--429553	28	2.4	30	78	9	79	52	0	0	47	1.00
429535--429567	15	2.1	16	88	5	50	45	0	0	54	0.99
429531--429564	17	1.9	18	88	5	52	44	0	0	55	0.99
429851--429966	25	4.8	25	69	18	68	41	0	0	57	1.04
429829--429912	30	2.7	32	79	15	86	42	1	0	55	1.07
429846--429927	30	2.6	31	79	13	78	45	0	0	54	0.99
429915--429964	22	2.2	23	79	10	59	36	2	0	62	1.07
430280--430386	31	3.4	31	77	10	110	39	1	1	57	1.21
430278--430388	16	7.0	16	78	11	104	39	1	1	56	1.20
430551--430600	21	2.3	23	83	16	70	44	8	4	44	1.52

Tables:   1   2   3   4   5   6