Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold95
Parameters: 2 7 7 80 10 50 1000
Length:  582947

Tables:   1   2   3   4   5   6   

This is table  6  of  6  ( 646 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
531939--531970
3
10.7
3
93
0
55
65
0
3
31
1.08
532421--532460
2
20.0
2
100
0
80
50
0
0
50
1.00
533818--533861
19
2.2
20
88
4
63
43
2
4
50
1.35
534242--534301
21
3.0
20
73
7
59
43
0
0
56
0.99
536079--536121
22
2.0
22
86
9
61
60
2
0
37
1.10
537010--537054
22
2.0
22
87
8
65
55
0
4
40
1.20
537567--537600
18
1.9
17
88
5
50
41
0
0
58
0.98
537985--538041
15
3.8
15
72
9
53
52
3
0
43
1.18
538359--538400
5
8.2
5
80
15
50
64
0
0
35
0.94
538333--538400
11
6.1
11
75
16
68
67
0
0
32
0.91
538652--538728
23
3.4
22
75
18
61
62
1
2
33
1.17
540643--540692
24
2.1
24
96
0
91
40
2
0
58
1.10
540643--540700
24
2.4
24
88
5
73
41
1
0
56
1.09
542106--542171
16
4.1
16
84
5
71
59
1
0
39
1.07
543449--543506
19
3.2
19
81
13
61
34
0
3
62
1.12
543470--543529
29
2.0
29
84
15
79
36
1
1
60
1.17
544386--544438
27
2.0
27
88
0
79
18
15
18
47
1.83
546792--546852
25
2.4
25
81
13
79
57
1
0
40
1.08
547343--547409
29
2.3
30
80
12
79
58
1
1
38
1.17
550744--550776
17
1.9
17
88
11
50
69
3
0
27
1.03
552434--552488
22
2.6
22
80
11
62
58
0
0
41
0.98
554706--554749
21
2.2
20
84
8
54
15
4
6
72
1.22
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
554723--554756
15
2.3
15
89
0
50
20
0
2
76
0.92
555341--555482
79
1.9
74
84
10
187
30
6
19
42
1.76
556239--556293
24
2.2
24
81
15
67
20
5
5
69
1.29
559041--559085
23
2.0
21
87
8
63
53
0
0
46
1.00
561311--561544
117
2.0
117
98
0
450
35
17
24
21
1.95
561785--561906
39
3.1
39
90
6
199
35
14
27
22
1.93
561785--561905
42
3.0
42
93
3
203
35
14
28
21
1.93
562494--562551
28
2.1
27
81
9
64
43
1
1
53
1.21
563258--563293
2
19.0
2
88
11
58
47
0
0
52
1.00
566381--566422
21
2.0
21
86
9
59
64
0
0
35
0.94
568210--568275
36
1.9
33
82
14
80
57
0
0
42
0.98
572253--572310
27
2.1
27
84
6
73
63
1
3
31
1.21
572831--572870
17
2.4
16
80
8
53
55
2
0
42
1.13
573113--573374
134
2.0
133
96
1
481
35
5
12
46
1.65
576199--576392
106
1.8
105
87
1
289
36
11
12
39
1.80
576518--576571
22
2.7
20
86
13
76
62
5
0
31
1.18
576543--576572
12
2.5
12
94
0
51
66
3
0
30
1.07
577697--577721
11
2.3
11
100
0
50
68
0
0
32
0.90
577696--577725
6
5.2
6
92
8
53
66
0
0
33
0.92
580540--580595
17
3.3
17
74
0
58
3
16
0
80
0.85
580538--580596
11
5.4
11
78
13
59
3
15
0
81
0.82
580538--580596
10
5.7
10
75
4
55
3
15
0
81
0.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
581871--581896
13
2.0
13
100
0
52
30
15
15
38
1.88
581851--581915
32
2.0
33
90
3
105
27
13
18
40
1.89

Tables:   1   2   3   4   5   6

The End!