genome.fa.s96.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold96
Parameters: 2 7 7 80 10 50 1000
Length:  1013983

Tables:   1   2   3   4   5   6   7   8   

This is table  8  of  8  ( 903 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
937540--937688	52	2.9	52	81	6	185	28	15	18	36	1.92
937677--937701	13	1.9	13	100	0	50	36	16	16	32	1.90
937656--937821	33	5.0	31	72	15	102	34	14	15	35	1.88
937742--937800	13	4.1	13	76	23	64	33	16	13	35	1.88
937744--937820	32	2.4	33	97	2	147	33	18	12	35	1.89
938579--939022	52	8.9	55	76	14	258	33	17	25	23	1.96
938683--938916	43	5.1	43	77	12	252	31	17	26	23	1.97
938980--939343	43	8.0	44	82	10	430	30	17	26	25	1.98
939112--939179	21	3.2	21	62	25	52	27	19	27	25	1.98
938980--939292	92	3.5	86	87	7	428	30	18	25	25	1.98
939133--939200	22	3.1	22	62	26	54	30	20	25	23	1.98
938980--939292	135	2.3	135	96	0	572	30	18	25	25	1.98
939204--939271	21	3.2	20	66	25	50	29	16	27	26	1.97
938980--939343	92	4.0	87	90	4	426	30	17	26	25	1.98
939338--939540	33	6.2	33	89	5	315	19	18	35	27	1.95
939548--940056	100	5.0	102	82	7	478	33	12	33	20	1.90
939744--940056	35	9.3	32	81	8	187	33	12	34	19	1.90
939548--940056	66	7.6	67	79	7	464	33	12	33	20	1.90
940042--940201	32	5.1	31	83	7	198	33	16	26	23	1.96
940041--940196	63	2.5	62	84	8	217	32	16	26	24	1.96
941164--941196	16	2.0	17	88	5	50	0	18	0	81	0.68
941171--941213	17	2.6	17	82	13	54	0	11	6	81	0.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
944081--944180	46	2.2	46	87	3	139	31	35	4	30	1.76
944103--944195	46	2.0	46	97	0	177	33	29	4	33	1.77
945205--945251	23	2.0	24	84	12	62	61	19	4	14	1.49
948250--948275	13	2.0	13	100	0	52	30	15	15	38	1.88
948230--948293	32	2.0	33	87	3	94	28	14	17	40	1.88
954911--955039	52	2.5	52	94	0	231	27	17	17	36	1.93
955100--955124	13	1.9	13	100	0	50	32	16	16	36	1.90
955079--955143	32	2.0	32	93	0	112	38	15	12	33	1.85
955081--955164	19	4.7	19	78	18	99	38	16	11	33	1.86
965359--965422	33	2.0	32	87	3	92	31	7	20	40	1.81
967456--967507	20	2.5	20	87	9	68	3	25	50	21	1.65
967675--967714	12	3.4	12	86	6	64	0	2	12	85	0.71
967675--967718	23	2.0	21	91	8	70	0	2	11	86	0.66
981550--981696	52	2.8	52	88	4	217	29	17	18	34	1.94
981757--981813	13	3.9	13	76	24	60	31	15	15	36	1.90
981733--981833	32	3.1	32	88	1	148	34	16	12	35	1.87
981758--981808	16	3.0	19	63	31	51	29	15	17	37	1.91
982782--982865	28	2.9	31	77	18	99	17	19	28	34	1.95
982836--983160	59	5.5	59	87	3	444	21	16	32	28	1.95
982841--983162	88	3.7	89	89	2	463	21	16	32	28	1.95
985978--986016	22	1.9	20	85	15	53	43	2	10	43	1.52
991699--991763	2	32.5	2	90	0	103	46	0	4	49	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
991699--991763	16	4.1	16	97	0	121	46	0	4	49	1.22
994305--994343	21	1.9	21	94	5	71	28	17	12	41	1.87
998390--998415	13	2.0	13	100	0	52	38	15	15	30	1.88
999179--999204	13	2.0	13	100	0	52	30	15	15	38	1.88
999903--999948	16	2.8	16	93	6	74	30	39	2	28	1.69
1001754--1001792	13	3.0	13	96	0	69	35	15	17	30	1.91
1001778--1001856	20	3.7	20	70	20	70	45	16	12	25	1.82
1003866--1003903	15	2.5	15	91	0	58	13	21	15	50	1.78
1007966--1007991	13	2.0	13	100	0	52	30	15	15	38	1.88
1008052--1008124	20	3.6	20	81	3	101	31	19	13	35	1.91
1008030--1008124	41	2.3	42	96	1	174	29	17	12	40	1.87
1008461--1008545	19	4.7	19	77	18	101	36	10	11	41	1.76
1008501--1008527	13	2.1	13	100	0	54	29	14	14	40	1.86
1008481--1008545	32	2.0	32	100	0	130	35	12	12	40	1.80
1008587--1008611	13	1.9	13	100	0	50	32	16	16	36	1.90
1008619--1008746	52	2.5	52	94	1	222	36	16	17	28	1.92
1009580--1009620	21	2.0	21	85	0	55	29	17	14	39	1.89
1011816--1011891	32	2.3	33	81	2	91	46	31	10	11	1.75
1011824--1011891	16	4.2	16	79	7	75	45	30	10	13	1.76

Tables:   1   2   3   4   5   6   7   8

The End!