genome.fa.s97.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold97
Parameters: 2 7 7 80 10 50 1000
Length:  856079

Tables:   1   2   3   4   5   

This is table  4  of  5  ( 572 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
561082--561153	20	3.6	20	83	7	76	33	16	12	37	1.86
561204--561228	13	1.9	13	100	0	50	32	16	20	32	1.94
561184--561248	33	2.0	32	88	11	96	33	15	20	30	1.93
565535--565632	49	2.0	49	97	0	187	35	8	29	26	1.85
567474--567530	13	4.4	13	81	0	69	33	14	17	35	1.90
567525--567557	13	2.5	13	90	0	57	36	15	15	33	1.88
567474--567546	26	2.8	26	85	0	101	32	13	17	35	1.89
574168--574349	89	2.0	89	98	0	355	40	13	13	32	1.83
577161--577211	19	2.6	20	81	3	59	27	17	15	39	1.90
577748--577828	34	2.5	32	77	13	92	34	12	23	29	1.91
588069--588221	76	2.0	76	96	0	279	41	13	22	22	1.89
590801--590834	17	2.0	17	94	0	59	38	14	5	41	1.70
591335--591378	22	2.0	22	91	4	72	43	2	9	45	1.48
591454--591508	20	2.8	20	85	0	74	40	27	9	23	1.85
591454--591525	20	3.6	19	83	3	72	41	23	9	25	1.84
592042--592128	31	2.7	31	76	13	86	37	12	17	32	1.87
594007--594050	16	2.8	16	82	3	54	52	27	9	11	1.67
594074--594119	18	2.3	21	78	21	71	63	28	8	0	1.24
594080--594124	18	2.5	18	100	0	90	60	28	11	0	1.31
594764--595061	165	1.8	166	83	5	406	27	16	14	41	1.87
598049--598099	20	2.6	19	87	6	75	29	17	13	39	1.88
598571--598721	31	4.5	35	78	14	169	30	11	24	33	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
600355--600403	21	2.3	22	89	3	73	57	2	26	14	1.48
604699--604857	31	4.9	31	79	9	142	31	11	25	31	1.91
607238--607284	24	2.0	24	100	0	94	29	17	8	44	1.78
610582--610635	20	2.7	20	85	8	65	40	11	16	31	1.84
610696--610743	20	2.4	20	89	0	69	29	10	8	52	1.65
611557--611623	33	2.0	33	88	0	98	34	11	13	40	1.81
611577--611601	13	1.9	13	100	0	50	36	16	16	32	1.90
611664--611688	13	1.9	13	100	0	50	32	16	16	36	1.90
611697--611820	52	2.4	52	93	4	207	34	18	17	29	1.94
621268--621320	19	2.7	20	85	8	72	28	13	18	39	1.88
621268--621326	19	3.0	18	80	14	64	25	11	22	40	1.88
623667--623713	21	2.3	21	82	10	62	44	4	19	31	1.70
623834--623872	13	3.0	13	96	0	69	35	15	17	30	1.91
623834--623937	46	2.3	46	83	3	120	37	15	18	28	1.91
627761--627812	21	2.5	20	78	9	59	23	9	3	63	1.41
630027--630052	13	2.0	13	100	0	52	30	15	15	38	1.88
631370--631630	135	1.9	138	89	3	413	27	11	7	53	1.64
632362--632421	11	5.5	11	74	7	50	73	1	21	3	1.07
634738--634860	1	123.0	1	65	0	57	82	12	4	0	0.84
634736--634863	6	20.7	6	78	15	102	82	13	3	0	0.86
634752--634834	5	15.8	5	82	14	71	81	13	3	1	0.87
634736--634863	58	2.2	59	88	5	188	82	13	3	0	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
634751--634859	22	4.6	24	73	11	82	82	11	4	0	0.86
636311--636423	29	3.9	29	80	8	131	28	34	17	19	1.95
636311--636616	34	9.9	30	78	9	149	23	33	15	27	1.95
636403--636562	34	4.7	34	90	2	241	18	33	11	36	1.87
636403--636557	68	2.3	69	93	1	267	18	34	12	34	1.88
636530--636616	27	3.1	27	85	4	93	24	35	17	22	1.95
636540--636631	28	3.3	28	83	7	98	29	35	17	17	1.93
636684--636947	49	5.8	46	73	13	179	24	26	20	28	1.99
636737--636805	22	3.2	21	68	12	59	26	23	20	30	1.98
636678--636993	87	3.5	89	81	4	368	25	25	19	29	1.99
636734--636986	39	5.9	39	70	15	119	24	25	21	28	1.99
637797--637915	13	7.8	13	69	29	67	35	12	17	34	1.88
637808--637934	19	7.7	18	69	28	104	33	11	18	36	1.87
637797--637942	32	4.6	32	97	0	274	34	12	17	35	1.88
638673--638698	13	2.0	13	100	0	52	38	15	15	30	1.88
642228--643362	157	7.3	156	77	5	732	23	17	20	37	1.94
642228--643007	314	2.5	313	79	5	817	23	17	20	37	1.94
646788--646831	21	2.1	21	83	8	54	25	31	4	38	1.76
648638--648663	13	2.0	13	100	0	52	38	15	15	30	1.88
650733--650763	15	2.1	15	93	0	53	12	22	16	48	1.80
652567--652611	21	2.1	21	84	8	56	22	20	4	53	1.63
654829--654854	13	2.0	13	100	0	52	30	15	15	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
664396--664498	16	6.2	17	71	20	85	38	1	1	57	1.21
664504--664532	13	2.1	14	93	6	51	34	0	6	58	1.25
665368--665424	25	2.3	25	78	6	62	49	7	3	40	1.47
665706--665747	21	2.0	21	90	0	66	42	4	0	52	1.22
666177--666249	26	2.6	28	74	22	73	42	4	2	50	1.35
666824--666858	18	1.9	18	88	0	52	17	31	0	51	1.45
671694--671734	22	2.0	20	85	9	55	48	4	0	46	1.23
674151--674371	103	2.1	102	85	4	300	29	25	10	33	1.90
675816--675858	20	2.0	22	82	8	54	48	0	0	51	1.00
681366--681430	33	2.0	32	90	3	103	29	10	20	40	1.86
681515--681539	13	1.9	13	100	0	50	36	16	16	32	1.90
681491--681559	33	2.1	32	83	2	84	30	13	21	34	1.91
681528--681578	20	2.5	20	93	0	93	27	11	25	35	1.91
688750--688803	28	2.0	28	88	3	83	18	22	14	44	1.86
690152--690177	13	2.0	13	100	0	52	30	15	15	38	1.88
690132--690195	33	2.0	32	90	3	101	26	14	20	39	1.90
695443--695497	23	2.4	23	96	3	103	52	3	7	36	1.47
695694--695722	14	2.1	14	100	0	58	51	6	6	34	1.55
696815--696981	69	2.4	69	79	6	178	35	23	13	26	1.92
700187--700267	29	2.7	29	81	7	83	48	13	20	17	1.81
700186--700282	29	3.3	28	77	10	70	48	14	19	17	1.81
700222--700307	29	3.0	28	75	14	75	47	11	19	20	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
700347--700614	30	9.0	30	68	14	108	44	11	21	23	1.84
700558--700626	31	2.3	31	79	2	77	42	10	23	24	1.85
702144--702172	14	2.1	14	93	6	51	17	6	6	68	1.34
703299--703433	70	2.0	70	89	5	213	26	13	4	55	1.57
706450--706501	20	2.5	21	81	6	61	42	13	17	26	1.86
706634--706677	21	2.1	21	82	0	52	34	13	11	40	1.81
707401--707472	20	3.6	19	88	7	83	34	13	19	31	1.91
713593--713619	13	2.1	13	100	0	54	37	14	14	33	1.88
715838--715949	51	2.2	51	88	0	161	33	12	24	30	1.92
715915--716490	109	5.3	108	87	0	722	32	16	25	26	1.96
716046--716107	28	2.2	28	85	0	79	24	17	33	24	1.96
715915--716452	217	2.5	216	85	3	749	32	16	25	26	1.96
716149--716218	28	2.5	28	83	0	95	28	15	31	24	1.96
716259--716331	28	2.6	28	82	0	83	24	20	31	23	1.98
716370--716440	28	2.5	29	88	6	110	26	19	29	23	1.98
716425--716544	51	2.4	51	84	2	152	32	11	25	30	1.91
718846--718919	20	3.7	19	82	7	85	41	10	16	31	1.82
718935--718991	20	2.8	20	81	2	60	47	10	14	28	1.76
719423--719670	42	6.0	42	76	12	226	41	10	29	18	1.84
719423--719694	84	3.3	84	94	1	467	42	9	28	19	1.82
719695--719805	42	2.6	43	80	9	120	39	18	22	19	1.92
719831--720062	61	3.8	61	86	3	317	27	20	27	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
719888--720297	215	1.9	215	84	6	544	26	19	27	26	1.99
720104--720446	114	2.9	116	85	6	428	26	19	25	27	1.99
720104--720472	55	6.5	55	77	12	354	26	19	25	27	1.99
721552--721590	8	4.9	8	84	9	53	0	2	10	87	0.65
721551--721590	18	2.2	19	90	4	64	0	2	10	87	0.63
721551--721589	15	2.6	15	88	8	53	0	2	10	87	0.65
734082--734197	51	2.3	51	84	3	144	36	12	19	31	1.90
734132--734700	109	5.3	106	85	4	644	33	16	24	25	1.96
734399--734473	28	2.7	26	84	15	89	26	18	30	24	1.98
734145--734700	217	2.6	216	86	4	751	33	16	24	25	1.96

Tables:   1   2   3   4   5