genome.fa.s99.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold99
Parameters: 2 7 7 80 10 50 1000
Length:  1377724

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  10  of  10  ( 1130 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1321804--1321870	33	2.0	33	88	0	98	25	14	16	43	1.86
1324209--1324549	52	6.5	53	72	16	217	29	26	12	31	1.92
1324323--1324398	27	2.7	29	90	6	113	25	34	19	21	1.96
1324272--1324664	107	3.7	106	72	10	316	28	27	13	30	1.94
1324212--1324661	212	2.1	212	86	2	629	29	27	12	30	1.93
1324534--1324590	28	2.0	29	82	3	71	24	28	15	31	1.96
1327683--1327712	14	2.1	14	93	0	51	13	16	30	40	1.87
1328637--1328692	19	2.9	19	86	2	85	26	19	14	39	1.90
1334388--1334413	13	2.0	13	100	0	52	38	7	0	53	1.30
1334490--1335006	179	2.8	178	86	4	660	41	12	11	34	1.79
1335814--1335942	32	4.1	33	72	21	98	2	17	14	65	1.38
1335866--1335979	20	5.7	20	69	25	73	0	20	13	65	1.31
1335882--1335918	18	1.9	18	89	10	56	2	18	10	67	1.32
1335843--1335986	61	2.4	62	90	2	220	2	19	14	63	1.39
1336589--1336672	43	2.0	43	88	4	125	42	11	19	26	1.85
1336612--1336678	13	4.8	13	75	13	71	40	13	20	25	1.89
1336715--1336757	18	2.4	18	80	0	50	30	2	0	67	1.03
1336750--1336791	22	1.9	22	95	0	75	42	0	2	54	1.13
1341462--1341487	13	2.0	13	100	0	52	30	15	15	38	1.88
1341442--1341505	32	2.0	33	90	3	103	28	14	15	42	1.86
1342552--1342578	13	2.1	13	100	0	54	29	14	14	40	1.86
1342562--1342614	19	2.7	19	88	2	79	32	18	13	35	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1342648--1342699	20	2.6	20	87	0	68	36	13	21	28	1.91
1343028--1343064	15	2.5	15	100	0	74	27	8	10	54	1.63
1344867--1345270	154	2.6	152	82	6	449	39	17	15	27	1.90
1346473--1346708	97	2.4	96	79	6	271	35	13	24	27	1.93
1349179--1349222	20	2.1	21	87	4	63	34	15	6	43	1.74
1349808--1350045	104	2.3	105	81	7	281	45	10	22	20	1.82
1350097--1350539	40	11.2	39	72	13	225	50	16	18	14	1.78
1350083--1350411	80	4.1	80	78	8	321	51	17	17	13	1.77
1350108--1350515	119	3.4	119	78	8	366	49	16	18	15	1.79
1358672--1358696	13	1.9	13	100	0	50	36	16	16	32	1.90
1358652--1358717	32	2.0	33	88	2	98	34	12	13	39	1.82
1358758--1358782	13	1.9	13	100	0	50	32	16	16	36	1.90
1358791--1358906	52	2.2	52	95	1	207	34	18	17	30	1.93
1370531--1370591	1	61.0	1	73	0	50	86	9	1	1	0.70
1370534--1370591	12	4.9	11	86	14	80	86	10	1	1	0.73
1370526--1370591	16	4.2	16	81	11	66	84	12	1	1	0.75
1370537--1370591	24	2.3	24	93	6	94	85	10	1	1	0.75
1372034--1372487	30	15.3	29	74	11	244	28	29	17	25	1.97
1372247--1372503	88	2.9	86	84	7	322	30	29	18	21	1.97
1372247--1372503	58	4.4	58	83	4	293	30	29	18	21	1.97
1372251--1372515	30	9.0	30	77	14	127	30	29	17	21	1.97
1372508--1372744	49	4.9	49	85	9	308	26	25	16	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1372600--1372692	43	2.2	43	98	0	177	26	25	17	30	1.97
1372602--1372670	22	3.2	22	62	25	56	26	26	17	30	1.97
1372554--1372744	92	2.0	94	91	5	307	25	25	16	32	1.96
1372646--1372781	51	2.5	54	82	5	161	22	25	16	36	1.94
1373661--1373685	13	1.9	13	100	0	50	32	16	16	36	1.90
1377502--1377555	20	2.7	20	97	0	99	33	18	11	37	1.86

Tables:   1   2   3   4   5   6   7   8   9   10

The End!