genome.fa.s323.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168148.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_39, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  321909

Tables:   1   2   3   4   

This is table  2  of  4  ( 454 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
114289--118485	181	23.4	180	73	9	1944	40	8	9	41	1.67
114281--115647	182	7.6	179	76	8	956	41	9	8	41	1.66
114329--118485	360	11.6	352	72	11	1373	40	8	9	41	1.67
116212--118483	902	2.5	894	77	6	2243	39	7	10	42	1.68
118380--118412	18	1.9	17	88	11	50	48	3	6	42	1.43
118386--118422	18	2.0	19	89	5	58	43	5	5	45	1.49
118556--122352	181	21.1	181	75	9	2751	40	7	9	42	1.66
118556--122352	360	10.6	358	74	10	2397	40	7	9	42	1.66
121105--121154	25	2.1	23	82	17	59	44	10	10	36	1.72
121159--121494	171	1.9	174	82	9	420	38	5	9	46	1.59
122968--123017	16	3.1	17	71	8	50	36	4	0	60	1.16
123361--123398	18	2.1	19	90	5	60	55	10	0	34	1.34
123415--123447	18	1.9	17	88	11	50	48	3	6	42	1.43
123665--124647	181	5.5	179	75	7	795	40	9	10	40	1.71
123697--124579	356	2.5	358	81	5	914	39	9	10	40	1.71
124518--124793	146	1.9	146	86	3	394	39	7	9	42	1.67
124162--125124	504	1.9	500	81	6	1176	40	8	9	41	1.68
124635--125355	182	4.0	180	80	3	808	40	8	10	41	1.68
125197--125509	154	2.0	155	83	4	396	42	8	8	40	1.66
125357--126948	181	8.9	178	73	8	858	40	8	9	41	1.69
124635--126230	875	1.8	875	80	3	1949	40	8	10	40	1.69
125918--126609	353	2.0	351	79	5	761	40	8	9	41	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
126115--126609	171	2.8	171	77	8	428	40	8	10	41	1.69
126814--127084	136	2.0	134	91	2	436	41	8	9	40	1.68
126992--127993	181	5.6	180	79	6	999	40	7	10	41	1.67
128274--132342	181	22.5	178	75	8	2572	40	9	8	40	1.69
128445--132312	720	5.3	716	76	9	2781	40	9	8	40	1.69
132282--132409	67	1.9	67	86	0	184	35	11	10	42	1.75
132444--132949	181	2.8	178	76	6	468	41	10	7	39	1.68
133079--133683	181	3.3	182	77	9	475	39	9	10	41	1.72
133083--133748	179	3.7	179	77	8	510	38	9	10	41	1.72
133687--133902	117	1.8	118	86	3	310	33	12	9	44	1.74
134918--135457	181	3.0	179	83	4	674	41	10	8	40	1.69
135488--135550	25	2.6	25	87	2	83	31	15	9	42	1.79
137433--137887	176	2.6	174	80	8	494	40	9	7	43	1.63
138094--138379	158	1.8	155	82	6	373	37	8	8	45	1.65
138219--140659	181	13.5	180	75	8	1607	41	10	8	40	1.69
138219--140659	180	13.5	181	75	8	1647	41	10	8	40	1.69
139334--139381	17	2.7	18	75	12	55	37	8	8	45	1.64
140747--143659	181	16.2	180	76	5	2155	42	9	7	39	1.67
145411--146867	181	8.1	181	77	6	1239	41	9	8	40	1.67
146976--147450	164	2.9	166	82	7	530	44	11	5	38	1.64
147916--147961	14	3.1	14	84	6	56	65	0	0	34	0.93
147866--148213	174	2.0	174	81	5	409	43	9	6	40	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
148702--148734	18	1.9	17	88	11	50	39	9	3	48	1.50
147369--153245	181	32.8	179	73	9	2919	41	9	8	40	1.68
150312--150344	18	1.9	17	88	11	50	39	6	6	48	1.53
152517--152561	19	2.4	19	100	0	90	26	13	11	48	1.75
152369--152736	199	1.9	194	82	2	466	39	10	8	40	1.71
152612--153093	178	2.7	180	80	0	545	41	11	7	38	1.71
153260--156680	181	19.0	180	76	6	2502	41	9	8	40	1.68
153247--157694	362	12.3	361	73	9	2607	41	9	8	39	1.68
156552--156844	148	2.0	148	79	2	320	37	8	10	43	1.70
156700--157110	216	1.9	216	80	2	484	43	9	9	37	1.69
156910--157694	181	4.3	178	75	8	623	43	10	7	38	1.68
156999--157693	370	1.9	370	80	5	834	43	10	7	38	1.67
157757--157798	20	2.2	20	86	4	59	50	4	2	42	1.36
157682--158694	182	5.7	182	77	7	783	42	9	7	40	1.66
158361--158758	175	2.3	177	80	9	422	40	10	8	40	1.69
158617--158898	145	1.9	148	81	4	347	44	9	7	37	1.66
159140--160114	181	5.5	174	75	9	549	42	10	8	39	1.69
159227--162818	180	19.9	179	74	10	2147	41	10	8	40	1.69
160360--160790	215	2.0	215	88	0	630	43	9	8	38	1.67
160575--162785	179	12.3	176	76	7	1505	41	10	8	40	1.68
158757--162836	538	7.5	537	75	9	2374	41	10	8	39	1.69
162968--163566	328	1.8	322	81	4	738	38	10	8	42	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
163270--166012	537	5.1	530	76	8	1688	41	9	8	40	1.68
163312--165965	181	14.8	179	73	10	1299	41	9	8	40	1.68
163320--165935	541	4.9	535	76	8	1427	41	9	8	40	1.68
163308--165995	360	7.5	355	74	9	1478	41	9	8	40	1.68
166062--168960	181	16.3	178	74	9	1828	42	9	7	39	1.66
165740--166333	322	1.8	322	83	5	797	44	8	7	38	1.65
168045--168955	180	5.1	180	76	7	640	43	9	7	38	1.66
166313--168592	886	2.6	877	76	8	2082	42	9	7	40	1.66
168950--170226	181	6.9	180	71	14	542	41	9	8	40	1.68
169646--170226	182	3.2	180	81	7	626	41	9	7	41	1.66
170112--170347	120	1.9	119	82	5	285	44	8	6	41	1.60
169791--170677	483	1.8	477	79	6	1002	41	9	7	41	1.65
170896--170928	18	1.9	17	88	11	50	39	6	6	48	1.53
170274--171523	356	3.5	350	76	10	953	40	10	8	41	1.69
170274--171468	535	2.2	534	78	6	1225	40	9	8	41	1.69
170236--171522	180	7.2	179	74	7	937	39	10	8	41	1.69
171412--171642	118	1.9	120	85	3	315	33	12	9	44	1.75
171525--173196	181	9.3	180	76	9	1359	42	10	7	39	1.68
171679--173048	534	2.5	535	78	8	1368	42	10	7	39	1.68
173295--175816	181	14.1	182	76	8	1947	41	9	8	40	1.68
173286--176609	721	4.7	718	75	10	2112	41	9	8	40	1.68
175848--176651	175	4.6	178	75	11	452	43	9	8	39	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
176336--176849	181	2.9	181	78	4	393	42	11	6	39	1.67
176849--179044	181	12.3	177	71	11	1040	40	9	8	41	1.69
176983--178029	536	1.9	537	79	7	1174	40	9	8	41	1.68
178257--178726	182	2.6	179	78	8	450	41	8	8	42	1.65
178336--178739	182	2.2	182	80	4	458	42	7	8	41	1.63
179819--181453	180	9.1	180	73	8	1094	41	9	9	39	1.70
179087--181454	180	13.3	176	73	10	742	41	9	9	39	1.70
180924--180962	19	1.9	20	85	15	53	35	15	7	41	1.76
180329--181310	542	1.8	542	83	4	1309	42	9	8	39	1.68
180385--181491	542	2.0	542	80	5	1234	43	9	8	38	1.68
181523--184316	182	15.7	178	71	11	662	41	9	8	39	1.68
182337--182684	177	2.0	178	81	4	409	42	10	8	38	1.70
182335--184292	182	11.0	181	74	9	1298	42	10	8	39	1.69
183580--183617	18	1.9	19	85	15	51	55	2	2	39	1.28
184399--187203	181	15.6	180	73	9	1743	41	10	8	40	1.69
184408--189371	362	13.8	356	74	9	3108	41	9	8	40	1.68
185910--185941	12	2.7	12	95	0	55	43	15	3	37	1.63
185936--189122	181	17.8	177	73	10	583	41	10	8	40	1.68
187252--189359	181	11.7	180	77	5	1602	41	9	8	40	1.67
190045--207259	541	32.3	539	71	12	4951	40	8	9	41	1.68
191157--191205	16	2.8	18	75	15	57	44	8	8	38	1.64
191288--191329	20	2.1	20	86	8	59	45	7	7	40	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
189985--194202	180	23.6	180	75	9	2929	40	8	9	41	1.67
192253--192285	18	1.9	17	88	11	50	48	3	9	39	1.50
194243--195605	181	7.6	180	76	6	548	40	7	10	40	1.69
195475--195739	147	1.8	146	86	4	383	38	8	8	44	1.65
196300--196967	181	3.7	179	82	5	778	38	7	10	43	1.67
196806--197102	147	2.0	147	81	5	352	38	7	10	43	1.68
196300--207262	362	30.7	357	71	12	2516	40	8	9	41	1.68
196838--197102	147	1.8	146	84	5	365	38	6	10	44	1.65
196952--202514	180	31.1	180	74	9	3328	39	8	10	41	1.69
198160--198212	18	3.0	18	72	13	56	45	7	7	39	1.61

Tables:   1   2   3   4