genome.fa.s323.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168148.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_39, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  321909

Tables:   1   2   3   4   

This is table  4  of  4  ( 454 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
263957--264781	181	4.6	181	76	5	663	40	8	9	41	1.69
264025--264678	360	1.8	361	81	4	829	39	7	9	42	1.67
263981--264797	360	2.3	360	78	5	819	40	8	9	41	1.68
266507--266849	181	1.9	181	79	1	393	39	7	12	39	1.72
266961--267838	181	4.9	179	76	6	695	40	9	9	39	1.71
267098--267788	361	1.9	361	82	5	851	40	8	9	41	1.69
268011--268892	181	4.9	180	77	6	754	40	8	10	40	1.72
268134--268810	361	1.9	361	82	3	862	40	7	11	40	1.70
268130--268893	361	2.1	362	80	5	841	39	8	10	41	1.71
268944--269937	181	5.5	180	77	5	810	39	9	10	40	1.72
269001--269915	362	2.5	358	77	5	914	40	9	11	39	1.72
269965--270954	179	5.5	181	75	7	679	39	9	10	40	1.72
269981--270869	180	4.9	181	76	7	684	40	8	10	40	1.70
270023--270870	359	2.4	360	77	7	871	39	8	11	40	1.72
271012--271350	180	1.9	181	82	4	427	42	8	8	40	1.65
271012--271893	181	4.9	181	77	5	716	39	7	10	41	1.69
271189--271959	361	2.1	360	80	5	824	38	8	10	42	1.70
272009--272895	181	4.9	176	76	7	685	40	7	11	40	1.69
273417--273766	180	1.9	180	82	5	429	37	8	10	44	1.69
273085--273940	182	4.7	179	74	11	589	40	8	10	39	1.71
274176--274995	361	2.3	359	77	6	814	40	7	10	41	1.68
275204--275609	180	2.3	180	81	4	446	42	9	8	38	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
275080--276036	181	5.3	181	75	7	644	39	8	10	40	1.71
276223--277005	181	4.3	180	77	8	644	40	7	10	40	1.69
276101--277072	181	5.4	176	76	8	597	39	8	10	41	1.70
277212--278092	180	4.9	181	77	3	706	40	8	10	39	1.71
277321--277973	361	1.8	361	81	3	821	39	8	10	41	1.70
278143--279032	180	4.9	182	77	5	795	40	8	10	41	1.70
277326--278925	841	1.9	842	78	5	1748	39	8	10	41	1.70
278173--279032	360	2.4	360	79	3	908	40	8	10	41	1.69
279195--280122	361	2.6	358	77	4	934	39	7	10	42	1.69
279180--280137	181	5.3	180	76	5	772	39	7	10	41	1.69
280187--281158	180	5.4	181	77	4	854	39	8	10	41	1.69
281208--282163	181	5.3	181	77	7	777	39	8	10	41	1.69
280982--284686	480	7.3	480	66	16	1869	39	8	10	41	1.70
281802--281849	25	1.9	25	83	8	62	45	2	2	50	1.25
281253--282163	359	2.5	358	76	6	899	39	8	10	41	1.69
282228--283217	180	5.5	183	78	6	914	39	8	10	42	1.69
283250--284206	181	5.3	181	78	5	828	40	8	10	41	1.69
283308--284206	361	2.5	360	78	5	954	40	8	10	40	1.69
284271--293896	181	53.7	179	74	9	5258	39	8	10	41	1.68
284473--293883	360	26.3	361	71	12	1121	39	8	10	41	1.68
285035--285681	176	3.6	175	76	8	448	40	8	10	40	1.70
289601--289633	18	1.9	17	88	11	50	48	3	6	42	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
287084--293767	539	12.5	536	75	8	4353	40	7	9	41	1.68
293769--294062	147	2.0	147	85	0	399	35	6	10	47	1.63
293931--296754	180	15.7	179	75	7	1899	40	8	9	41	1.67
293918--297388	723	4.9	712	75	8	2305	40	8	9	41	1.67
287093--297261	539	19.0	526	74	10	3356	40	8	9	41	1.67
296622--296900	146	1.9	146	86	1	398	41	7	8	43	1.63
296759--297425	181	3.7	178	76	6	639	41	7	8	42	1.63
297484--298584	181	6.1	180	74	8	796	41	9	8	39	1.69
297484--298584	361	3.1	356	78	6	1064	41	9	8	39	1.69
298424--298722	152	2.0	151	80	5	345	41	11	9	37	1.73
298650--299536	181	4.9	180	75	8	765	40	10	7	41	1.67
298650--299486	361	2.3	358	78	7	874	39	10	7	42	1.68
299521--303551	358	11.2	355	73	11	1557	41	10	8	39	1.70
299524--303558	181	22.4	179	72	10	1972	41	10	8	39	1.70
299527--303534	923	4.4	894	77	8	2634	41	10	8	39	1.70
300661--303539	539	5.3	543	73	10	1361	41	9	8	39	1.70
301603--301651	25	2.0	24	92	4	80	48	0	18	32	1.48
301603--301651	24	2.0	25	88	4	73	48	0	18	32	1.48
301061--302165	565	1.9	567	80	4	1289	42	10	8	38	1.71
303460--303677	120	1.8	120	86	4	314	33	11	8	47	1.69
303288--303835	301	1.8	301	86	2	796	38	10	8	43	1.69
303936--303987	18	2.9	20	73	26	62	40	13	3	42	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
303109--304018	482	1.9	477	82	6	1126	38	10	9	41	1.72
303577--305848	181	12.8	180	74	8	1577	40	10	8	40	1.70
303579--304872	534	2.4	531	80	5	1224	41	10	8	39	1.71
305711--306001	154	1.9	154	84	1	386	37	10	8	42	1.71
305563--306183	335	1.9	330	80	4	737	39	11	7	41	1.70
305862--306384	180	2.9	179	80	4	577	40	9	7	42	1.65
306419--306949	181	2.9	180	85	4	699	39	8	8	43	1.66
305950--306846	462	1.9	460	83	3	1131	41	8	8	41	1.65
306934--306996	30	2.1	30	93	0	108	33	6	9	50	1.60
307520--307574	24	2.3	24	96	0	101	43	14	7	34	1.73
307542--308734	180	6.6	178	75	9	983	41	10	8	38	1.71
307271--308734	542	2.7	541	86	3	1847	42	10	8	38	1.70
308448--309036	305	1.9	305	84	2	772	40	11	8	39	1.71
308737--309131	181	2.2	182	80	4	449	41	9	8	40	1.67
309405--309450	21	2.2	20	84	7	56	60	2	0	36	1.09
309139--316946	181	43.8	173	71	12	2960	41	10	8	39	1.68
310357--310654	161	1.9	160	82	4	375	42	9	6	41	1.62
309665--311379	881	2.0	871	79	6	1908	41	9	8	40	1.68
310537--316940	539	11.9	536	74	9	3982	41	10	8	39	1.69
311602--316858	718	7.3	707	74	9	3247	41	10	7	39	1.68
311602--316566	537	9.2	540	75	8	3182	41	10	7	39	1.68
314456--314855	200	2.0	202	81	6	481	40	10	8	41	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
314659--316803	361	6.0	351	74	10	1072	42	9	7	40	1.67
317015--317088	7	10.6	7	77	11	53	4	18	55	21	1.59
317015--317139	14	8.8	14	76	10	58	4	14	53	27	1.61
317022--317088	14	4.8	14	83	10	75	4	19	55	20	1.60
317056--317139	22	3.9	22	73	11	59	5	9	53	30	1.57
317093--321909	7	688.3	7	99	0	9334	13	0	43	42	1.45

Tables:   1   2   3   4

The End!