genome.fa.s390.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168215.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_45, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  205015

Tables:   1   2   3   4   5   

This is table  2  of  5  ( 527 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41861--41912	26	2.0	26	84	0	68	50	3	1	44	1.31
41955--42012	25	2.4	25	85	5	75	50	1	1	46	1.22
42143--42200	23	2.6	23	79	17	68	50	0	1	48	1.11
42186--42218	17	1.9	17	93	0	57	60	6	0	33	1.21
42567--42595	14	2.0	15	93	6	51	44	0	0	55	0.99
42557--42595	18	2.2	18	90	0	60	46	2	0	51	1.14
42730--42764	14	2.6	13	86	8	52	57	2	0	40	1.14
42705--42753	23	2.1	24	85	11	66	51	2	0	46	1.12
42801--42864	26	2.3	29	79	15	82	46	0	4	48	1.23
42941--42995	28	2.0	27	82	7	65	45	3	0	50	1.19
43613--43654	12	3.2	13	76	10	50	35	0	2	61	1.09
43605--43676	23	3.1	24	69	20	64	41	0	1	56	1.07
43923--43962	21	1.9	21	94	0	71	52	2	2	42	1.28
45071--45261	33	5.5	37	69	24	102	50	1	2	45	1.25
45083--45170	10	8.1	11	66	19	51	54	1	1	43	1.15
45098--45170	19	4.0	19	74	13	64	57	1	0	41	1.07
45117--45170	14	3.7	15	74	18	51	57	0	0	42	0.98
45275--45406	22	6.0	22	67	21	64	48	2	0	49	1.13
45411--45457	24	2.0	23	83	4	58	44	4	0	51	1.21
45499--45554	24	2.4	24	81	3	60	44	0	3	51	1.18
45871--45929	11	5.7	11	76	13	54	45	0	1	52	1.10
45916--45954	16	2.4	16	86	0	60	48	0	2	48	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46624--46673	20	2.5	20	83	0	55	48	0	2	50	1.12
46635--46686	15	3.5	15	76	2	52	46	0	0	53	1.00
46680--46729	14	3.6	14	76	15	50	50	0	0	50	1.00
46691--46746	19	3.1	19	73	14	55	51	0	0	48	1.00
46709--46747	15	2.5	15	83	4	51	48	0	0	51	1.00
46723--46751	12	2.3	13	94	5	51	51	0	0	48	1.00
46920--46968	23	2.1	23	85	7	64	51	0	0	48	1.00
47660--47698	19	2.0	20	85	5	53	53	0	0	46	1.00
48337--48392	19	3.1	18	79	20	64	51	1	0	46	1.11
48341--48388	19	2.5	20	83	16	66	54	2	0	43	1.12
48383--48426	19	2.3	19	80	7	54	54	4	0	40	1.21
48420--48460	21	1.9	22	85	5	57	58	4	2	34	1.32
49404--49433	15	2.1	15	93	6	53	60	0	0	40	0.97
49691--49749	24	2.5	23	74	17	57	44	3	3	49	1.36
49968--49997	15	2.1	15	93	6	53	60	0	0	40	0.97
49096--50029	503	1.9	499	80	10	1098	48	3	2	45	1.34
50389--50492	6	17.0	6	67	21	56	46	0	2	50	1.23
50420--50536	12	9.0	13	65	25	52	46	0	3	49	1.24
50542--50579	16	2.5	16	87	8	53	44	0	0	55	0.99
50548--50608	20	3.0	20	79	13	70	49	0	0	50	1.00
51045--51078	16	2.1	16	94	0	59	47	0	0	52	1.00
51135--51167	14	2.4	14	90	5	50	39	0	3	57	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51225--54425	181	18.1	178	70	11	1133	41	10	8	39	1.69
52711--54401	358	4.7	355	75	9	1172	40	10	8	40	1.69
52634--53645	534	1.9	534	81	3	1223	40	10	8	40	1.71
52674--54406	181	9.7	177	74	8	1184	40	10	8	40	1.69
54294--54542	136	1.8	136	80	3	304	40	9	8	41	1.67
55104--55142	19	2.1	19	85	9	53	48	2	2	46	1.29
55442--55495	18	2.8	20	75	18	60	57	0	3	38	1.17
55597--55637	14	3.1	14	82	6	50	51	0	2	46	1.14
55626--55705	23	3.4	23	71	10	63	37	2	3	56	1.31
55808--55875	16	4.1	16	71	17	57	51	1	1	45	1.19
55886--55929	24	1.9	24	81	9	56	45	0	4	50	1.22
55920--55955	10	3.5	11	88	11	58	52	0	0	47	1.00
56751--57542	181	4.5	176	74	8	542	42	8	9	39	1.68
57727--58968	359	3.5	357	77	8	1002	40	7	10	41	1.68
57699--58968	180	7.1	180	78	6	1080	40	7	10	41	1.68
59213--59245	18	1.9	17	88	11	50	42	6	12	39	1.67
59011--59610	181	3.3	178	79	5	645	41	9	10	38	1.73
59079--59610	180	2.9	181	79	5	558	42	9	10	38	1.71
59574--59606	18	1.9	17	88	11	50	48	6	6	39	1.53
59569--59615	19	2.7	18	80	12	62	44	4	10	40	1.59
59632--62373	181	15.2	180	74	9	1683	41	9	8	40	1.68
60134--61908	723	2.5	703	78	7	1813	41	9	8	41	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61976--62027	19	2.3	23	69	30	58	34	17	3	44	1.67
61985--62022	19	2.0	19	100	0	76	42	21	5	31	1.75
62779--62820	17	2.4	18	84	8	59	61	2	0	35	1.09
63291--63357	26	2.5	26	76	9	73	37	1	2	58	1.23
63292--63359	27	2.4	29	73	11	70	36	1	2	58	1.22
63392--64505	181	6.1	181	76	9	903	40	7	9	42	1.66
64490--64574	28	3.0	29	81	10	86	43	1	1	54	1.15
64503--64584	14	5.9	14	77	9	71	46	1	0	52	1.08
64821--65419	182	3.3	182	80	4	551	41	10	7	40	1.68
65004--65446	173	2.5	176	78	9	436	42	11	6	39	1.68
65384--65513	65	2.0	67	91	8	214	36	16	5	41	1.71
67138--67458	155	2.1	155	81	5	371	44	8	7	39	1.63
67504--67559	18	3.2	18	75	12	62	35	8	7	48	1.62
67322--68753	181	7.9	175	72	11	813	42	9	8	39	1.67
68753--68802	10	4.9	10	80	9	57	56	0	2	42	1.11
68931--68981	21	2.4	22	81	15	63	41	0	1	56	1.10
68953--68985	13	2.4	14	85	10	50	45	0	0	54	0.99
69074--69142	18	3.7	18	72	14	59	49	4	0	46	1.21
73130--73178	23	2.0	24	84	7	64	75	0	14	10	1.04
73097--73186	17	5.5	17	77	16	77	74	0	16	8	1.06
74421--74716	41	7.1	42	89	5	390	23	17	23	35	1.95
74991--75058	29	2.2	33	79	12	81	27	5	5	60	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75070--75133	22	2.8	22	78	17	67	18	4	4	71	1.21
75089--75156	21	3.4	19	82	8	73	22	4	4	69	1.25
76032--76124	34	2.7	32	77	9	87	13	9	2	74	1.16
76047--76106	29	2.0	30	81	15	72	13	8	1	76	1.08
76141--76356	117	1.8	118	94	3	382	44	6	13	34	1.71
76141--76356	59	3.7	58	87	5	328	44	6	13	34	1.71
76336--76403	31	2.2	31	94	0	118	38	10	14	36	1.81
76277--76448	90	1.9	92	87	4	260	44	7	13	34	1.72
76915--77003	15	6.6	14	71	24	75	52	0	0	47	1.00
76919--77017	29	3.1	32	76	16	89	51	0	1	47	1.07
76915--77027	29	4.1	28	71	24	80	50	0	0	48	1.06
76917--77041	57	2.2	57	80	12	141	49	0	0	48	1.12
77238--77308	11	7.3	10	83	16	64	46	2	0	50	1.16
77241--77323	11	8.8	9	79	18	57	44	2	1	51	1.22
77254--77300	12	3.5	13	83	16	60	46	2	0	51	1.13
77238--77308	22	3.1	21	71	24	72	46	2	0	50	1.16
77506--77566	25	2.4	25	82	12	72	50	0	0	49	1.00
77489--77580	34	2.7	33	77	17	98	52	0	1	46	1.07
78198--78251	16	3.2	16	75	17	56	50	1	0	48	1.11
78203--78253	18	2.9	18	80	5	61	50	1	0	47	1.12
78180--78251	26	2.7	27	79	14	78	51	1	0	47	1.09
78326--78386	27	2.2	28	83	11	74	52	4	1	40	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
78640--78691	23	2.3	23	86	6	70	50	1	1	46	1.23
78919--78962	13	3.5	13	85	14	65	47	4	0	47	1.22
78921--78964	20	2.2	20	83	0	52	47	4	0	47	1.22
78903--79002	7	15.0	7	67	29	51	45	4	0	51	1.20
78928--78969	20	2.1	20	86	0	57	45	2	0	52	1.13
78914--78962	25	2.0	25	92	8	82	48	4	0	46	1.20
78939--79041	35	3.1	35	75	23	98	41	0	0	56	1.12
79006--79058	19	2.8	19	88	11	74	32	0	0	67	0.91
79006--79058	9	5.7	9	80	6	61	32	0	0	67	0.91
79288--79336	24	2.0	24	85	14	66	51	2	0	46	1.12

Tables:   1   2   3   4   5