genome.fa.s390.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168215.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_45, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  205015

Tables:   1   2   3   4   5   

This is table  3  of  5  ( 527 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
79590--79782	10	19.0	10	68	23	86	49	1	1	48	1.15
79591--79661	37	1.9	37	88	5	108	53	0	0	46	1.00
79611--79707	43	2.3	43	81	13	103	50	2	0	47	1.12
79593--79709	21	5.8	21	69	25	76	50	1	0	47	1.11
79651--79738	33	2.6	34	77	13	92	44	2	1	52	1.21
79898--79936	10	3.9	10	86	10	53	48	0	0	51	1.00
79945--79988	15	2.7	16	82	13	54	50	0	0	50	1.00
79906--79989	20	4.2	20	71	15	57	48	0	0	51	1.00
79906--79989	34	2.8	32	73	25	83	48	0	0	51	1.00
79904--80096	53	3.6	52	72	18	137	46	2	2	49	1.25
82178--82225	20	2.3	21	86	10	64	39	27	16	16	1.90
87882--87907	13	2.0	13	100	0	52	7	7	30	53	1.57
87999--88046	24	2.0	24	100	0	96	37	0	20	41	1.53
89845--89898	26	2.1	26	86	6	74	44	0	0	55	0.99
89858--89909	26	2.0	25	81	3	59	42	3	0	53	1.19
89957--90011	22	2.6	21	76	18	60	43	0	1	54	1.10
90017--90094	18	4.2	19	70	25	60	48	2	1	47	1.23
90002--90104	29	3.8	26	75	22	104	49	1	1	46	1.24
90002--90103	27	3.7	27	75	19	104	50	1	1	46	1.24
90399--90443	10	4.7	9	81	13	54	53	0	0	46	1.00
90399--90443	19	2.3	20	88	3	74	53	0	0	46	1.00
91531--91563	10	3.2	11	83	16	52	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91624--91687	22	2.7	23	81	13	69	42	0	1	56	1.09
91697--91790	23	4.3	22	86	13	117	54	0	1	44	1.07
91712--91764	10	5.1	10	80	14	63	56	0	0	43	0.99
91711--91784	13	6.0	13	77	22	72	56	0	1	41	1.07
92272--92310	17	2.3	17	86	8	53	48	0	0	51	1.00
92272--92357	20	4.3	19	76	18	61	52	1	1	45	1.16
92680--92718	16	2.4	17	87	8	55	56	0	0	43	0.99
92842--92997	13	11.3	13	67	18	66	47	1	0	50	1.13
92831--92982	16	9.6	16	68	23	65	48	1	0	50	1.09
92913--93008	28	3.4	28	71	18	76	47	2	1	48	1.20
92886--92975	22	4.1	22	67	23	64	47	2	0	50	1.13
92886--93056	67	2.5	69	77	11	167	46	4	1	47	1.31
93396--93456	12	4.8	12	78	13	52	44	1	0	54	1.10
93410--93456	13	3.5	13	77	11	51	46	0	0	53	1.00
93413--93463	25	2.1	24	82	10	59	41	0	0	58	0.98
93671--93749	26	3.0	26	73	12	72	44	3	0	51	1.19
93898--93945	25	1.9	25	83	8	62	45	0	4	50	1.21
94109--94147	17	2.2	19	86	9	55	35	0	2	61	1.10
94248--94313	21	3.4	18	72	24	55	43	1	3	51	1.26
94322--94369	13	3.8	13	73	15	55	45	2	6	45	1.40
94328--94381	25	2.2	24	87	9	74	44	1	7	46	1.42
94616--94654	20	2.0	20	85	10	53	35	0	5	58	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94938--94981	21	2.0	22	83	12	56	45	0	4	50	1.22
95230--95302	28	2.6	30	75	14	84	46	0	4	49	1.21
95932--95989	21	2.5	24	75	21	68	37	6	5	50	1.52
95939--95980	21	2.0	21	95	0	75	35	4	7	52	1.50
96722--98586	181	10.4	179	75	8	1343	41	10	8	40	1.68
96722--98584	361	5.2	360	76	6	1495	41	10	8	39	1.68
97993--98024	17	1.9	17	93	6	57	40	9	0	50	1.35
98574--99510	180	5.2	176	75	9	711	42	9	8	39	1.68
99802--99841	19	2.1	19	90	0	62	50	0	0	50	1.00
99915--99948	13	2.5	14	90	4	52	50	2	0	47	1.16
99998--100041	13	3.2	13	83	6	52	45	6	0	47	1.29
100514--100557	17	2.6	17	82	3	54	59	2	0	38	1.10
100533--100610	6	13.0	6	71	15	63	51	0	2	46	1.14
100527--100610	25	3.4	25	74	14	86	52	0	2	45	1.13
100794--100831	18	2.1	19	90	5	60	44	0	0	55	0.99
100787--100836	21	2.3	21	80	13	57	48	0	0	52	1.00
100912--101014	32	3.2	32	69	18	79	46	0	4	47	1.30
106522--106576	21	2.6	21	91	2	83	32	25	18	23	1.97
106451--106652	98	2.1	97	83	2	253	30	22	13	33	1.93
106476--106669	97	2.0	98	82	1	237	30	22	14	31	1.94
109242--109313	35	2.0	36	82	12	87	50	5	1	43	1.34
110177--110231	17	3.2	16	75	10	56	47	1	0	50	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110160--110231	34	2.1	34	82	5	83	45	2	2	48	1.31
110180--110220	20	2.1	19	86	4	55	41	2	0	56	1.13
110208--110266	14	4.4	13	73	14	57	52	0	0	47	1.00
110207--110266	28	2.2	27	82	5	77	51	0	0	48	1.00
110570--110599	7	4.4	7	95	4	53	56	0	0	43	0.99
110830--110889	24	2.5	22	78	10	57	53	1	0	45	1.10
111235--111304	25	2.6	27	80	8	74	51	0	1	47	1.09
111263--111301	15	2.5	16	83	8	53	53	0	0	46	1.00
111250--111304	25	2.2	25	87	6	76	50	0	0	49	1.00
111679--111826	15	10.2	15	68	22	61	45	2	1	51	1.21
111747--111826	12	6.4	12	75	16	58	47	1	1	50	1.17
111747--111803	28	2.0	29	86	3	80	47	1	1	49	1.22
111759--111823	8	8.0	8	76	23	57	46	1	1	50	1.20
111986--112029	23	1.9	23	86	9	63	40	2	2	54	1.25
111986--112052	24	2.9	23	76	14	66	43	1	1	53	1.19
112012--112127	18	6.3	17	80	12	83	49	0	0	49	1.13
112057--112130	37	2.0	39	75	17	68	52	1	0	45	1.09
112028--112126	4	26.5	4	70	15	70	50	1	0	48	1.07
112022--112134	58	2.0	56	89	8	174	51	0	0	47	1.06
112868--112905	18	2.0	20	85	10	53	50	0	5	44	1.24
113459--113510	13	4.2	12	77	18	54	53	3	1	40	1.30
113515--113571	22	2.4	22	82	11	60	42	0	3	54	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
113510--113607	26	3.7	26	72	18	76	41	0	5	53	1.23
114858--114890	18	1.9	17	88	11	50	48	6	6	39	1.53
114653--115053	177	2.2	177	79	6	416	42	6	10	40	1.66
115725--115784	30	2.0	31	83	9	79	46	3	0	50	1.18
115841--115881	22	1.9	21	85	5	55	43	4	2	48	1.37
116066--116110	22	2.0	22	91	0	72	51	0	2	46	1.13
116670--117172	181	2.8	180	84	4	636	40	8	10	39	1.71
117333--117395	21	3.0	20	76	15	65	39	1	1	57	1.18
117764--117807	19	2.3	20	81	18	58	59	4	0	36	1.18
118342--118366	8	3.1	8	100	0	50	36	0	0	64	0.94
118516--118566	27	2.0	25	88	7	75	47	1	1	49	1.24
118881--118920	15	2.5	17	76	19	50	42	0	0	57	0.98
119160--119216	19	3.2	18	73	21	57	45	1	0	52	1.11
119270--119317	23	2.1	22	88	3	69	45	2	4	47	1.33
119722--119782	18	3.4	18	79	4	61	54	0	1	44	1.10
119825--119908	38	2.2	38	95	0	150	39	4	4	51	1.44
119847--119911	20	3.3	20	66	23	57	35	4	6	53	1.46
119913--119962	14	3.8	14	76	12	61	52	0	0	48	1.00
120269--120355	34	2.4	36	76	17	92	44	2	3	49	1.31
120352--120404	18	2.8	19	82	17	67	45	0	0	54	0.99
120376--120439	18	3.7	17	74	19	53	48	1	1	48	1.20
120534--120598	21	3.1	21	77	18	73	41	0	1	56	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
120621--120657	19	1.9	19	88	0	56	35	0	5	59	1.20
120686--120801	11	10.2	12	66	27	58	53	1	0	43	1.16
120704--120735	16	1.9	17	93	6	57	46	3	0	50	1.17
120749--120789	15	2.7	16	85	7	50	58	0	0	41	0.98
120761--120813	23	2.2	25	83	6	65	52	0	1	45	1.11
120912--120967	13	4.4	12	74	17	51	48	1	1	48	1.22
121283--121618	182	1.8	182	79	8	389	40	7	8	44	1.63
121710--121760	22	2.5	20	75	12	59	47	5	0	47	1.26
121740--121843	53	1.9	54	83	16	135	50	1	0	47	1.19
121802--121852	26	2.0	25	88	3	75	47	0	1	50	1.12

Tables:   1   2   3   4   5