genome.fa.s390.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168215.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_45, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  205015

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 527 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
183118--184161	181	5.8	180	75	9	674	41	9	8	40	1.68
183544--183576	18	1.9	17	88	11	50	36	9	6	48	1.60
183118--184231	177	6.1	178	74	11	606	41	9	8	40	1.67
184458--184507	14	3.2	16	81	18	61	52	0	2	46	1.12
184770--184803	13	2.6	13	85	0	50	47	0	2	50	1.16
185434--185466	18	1.9	17	88	11	50	48	6	6	39	1.53
185267--187937	180	14.9	181	76	6	2096	40	7	10	41	1.68
187952--187999	18	2.7	19	81	12	66	43	10	2	43	1.50
188002--188052	25	2.0	25	96	0	93	35	11	7	45	1.70
188020--188602	181	3.3	179	78	4	518	37	10	9	42	1.72
188629--190862	181	12.4	181	71	11	1200	40	10	8	40	1.69
189350--189996	176	3.6	176	77	4	597	42	10	7	40	1.67
189966--190034	36	1.9	36	96	0	129	47	7	2	42	1.46
190072--190398	171	1.9	171	82	3	408	40	10	8	40	1.70
190073--190874	357	2.3	352	78	5	814	39	9	8	42	1.69
191082--191136	24	2.3	24	75	12	58	58	1	1	38	1.20
191589--191687	17	5.3	18	71	20	55	48	5	2	44	1.36
191902--191969	23	2.9	23	70	10	57	60	4	2	32	1.32
192056--192107	18	3.0	18	77	5	54	44	1	5	48	1.38
192409--192459	9	5.1	10	78	21	54	52	0	0	47	1.00
192414--192457	23	2.0	23	95	4	81	54	0	0	45	0.99
192473--192511	19	2.1	19	85	9	53	46	2	2	48	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
192785--194355	181	8.8	174	73	9	901	40	8	9	41	1.69
192785--194355	361	4.4	353	76	8	1189	40	8	9	41	1.69
194307--194350	23	2.0	22	86	13	63	36	2	2	59	1.23
194383--194424	14	3.1	13	81	18	50	42	0	0	57	0.99
194391--194494	27	3.9	27	69	22	67	47	0	0	50	1.14
196666--196753	10	8.2	10	73	19	63	47	2	0	50	1.13
196717--196760	22	2.0	23	86	13	65	50	0	0	50	1.00
197218--197283	31	2.3	31	82	10	77	48	0	1	50	1.10
197836--197869	17	1.9	18	88	5	52	50	5	0	44	1.26
198129--198169	14	2.6	16	82	17	50	58	2	0	39	1.11
198125--198285	51	3.3	49	67	15	111	52	3	1	43	1.25
198207--198262	28	2.0	28	89	10	87	51	0	0	48	1.00
198247--198289	18	2.4	18	82	17	54	51	0	2	46	1.13
198207--198301	21	4.5	21	67	15	61	49	0	1	49	1.07
198403--198445	22	2.0	22	95	0	77	60	0	0	39	0.97
198832--198870	21	1.9	20	89	5	60	51	5	2	41	1.38
198854--198955	35	3.1	33	81	8	102	53	1	0	44	1.11
200005--200055	23	2.3	21	75	15	50	45	3	0	50	1.20
200045--200110	21	3.1	22	80	6	82	45	0	1	53	1.09
200120--200607	175	2.8	174	76	4	480	41	9	7	41	1.66
201033--201515	177	2.7	175	80	6	517	38	7	11	42	1.68
201932--203296	181	7.7	179	74	9	948	41	9	8	40	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
203453--203502	19	2.6	19	76	17	59	40	0	4	56	1.18
203474--203499	12	2.2	12	100	0	52	42	0	0	57	0.98
203701--204631	178	5.2	177	77	5	828	40	7	10	41	1.68

Tables:   1   2   3   4   5

The End!