genome.fa.s490.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168315.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_54, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  150814

Tables:   1   2   3   4   

This is table  3  of  4  ( 411 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
96369--96417	13	3.6	14	77	17	50	48	0	2	48	1.12
96465--96506	17	2.5	17	80	7	50	57	0	0	42	0.99
96531--96561	13	2.4	13	88	0	53	54	0	0	45	0.99
96481--96587	17	6.2	17	65	21	62	53	0	0	45	1.06
96513--96600	34	2.6	34	78	7	81	53	0	0	46	1.00
96835--98046	181	6.8	180	76	7	970	41	9	7	40	1.67
96835--98037	360	3.3	352	77	7	1043	41	10	7	40	1.67
98754--98802	14	3.3	15	83	8	57	59	2	2	36	1.21
99376--99424	20	2.7	18	79	14	55	48	2	8	40	1.44
99453--99500	18	2.6	18	80	9	53	41	6	4	47	1.48
99493--99533	21	2.0	21	90	0	64	46	0	2	51	1.14
99494--99544	21	2.4	21	83	6	59	50	0	1	47	1.12
99516--99590	41	1.9	36	82	12	87	46	2	2	48	1.30
100660--100708	8	5.8	9	77	18	52	46	0	0	53	1.00
100794--100850	29	2.0	29	86	6	80	38	0	0	61	0.96
101917--101959	19	2.3	19	83	0	50	53	0	2	44	1.13
101911--101966	24	2.3	25	81	6	71	51	0	1	46	1.11
104210--104295	33	2.6	33	78	7	86	52	1	0	46	1.08
104472--104503	14	2.4	14	94	5	57	50	0	0	50	1.00
104684--104732	19	2.5	19	77	9	55	46	4	2	46	1.33
104676--104756	12	6.7	12	74	14	53	49	3	1	45	1.27
105172--105204	12	2.6	13	90	4	50	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105337--105385	25	2.0	24	84	11	64	40	2	4	53	1.32
105705--105752	21	2.1	24	88	11	75	52	0	0	47	1.00
105778--105830	21	2.5	21	79	14	56	45	1	0	52	1.11
105860--105901	20	2.0	21	86	4	59	54	0	2	42	1.13
106461--106630	92	1.8	92	84	0	232	45	10	10	34	1.71
107163--107201	16	2.4	16	86	4	51	43	5	2	48	1.38
107526--107582	22	2.4	25	83	11	68	50	0	1	47	1.11
107623--107684	26	2.4	27	78	13	67	41	0	3	54	1.16
107672--107703	15	2.1	15	100	0	64	56	0	0	43	0.99
107908--107947	21	1.9	21	89	0	62	40	5	2	52	1.37
108077--108114	16	2.3	17	82	17	53	47	0	0	52	1.00
108168--108215	14	3.5	14	75	13	55	52	0	0	47	1.00
108169--108217	22	2.2	22	78	7	55	51	0	0	48	1.00
108753--108871	19	6.3	19	67	25	74	48	0	1	49	1.11
108757--108801	12	3.6	12	84	6	54	51	0	2	46	1.13
108937--108983	20	2.4	20	86	10	62	61	0	4	34	1.15
109024--109054	16	2.0	15	93	6	53	32	6	3	58	1.40
109076--109100	10	2.5	10	100	0	50	48	0	0	52	1.00
109039--109121	27	3.1	26	77	11	78	44	1	1	53	1.16
109471--109505	16	2.1	18	89	10	56	45	0	5	48	1.26
109942--109989	25	2.0	24	84	12	62	56	0	2	41	1.11
110015--110064	14	3.6	14	76	15	50	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110026--110068	19	2.2	20	84	8	54	53	0	0	46	1.00
110225--110294	31	2.3	31	78	11	81	44	0	1	54	1.09
110238--110293	17	3.4	16	76	16	53	48	0	0	51	1.00
110239--110286	23	2.1	23	88	7	71	47	0	0	52	1.00
110231--110298	25	2.8	23	82	17	77	45	0	1	52	1.09
110972--111012	19	2.1	20	86	4	57	53	0	0	46	1.00
111030--111074	22	2.0	22	83	8	56	48	2	2	46	1.26
111170--111218	23	2.2	22	85	10	64	48	0	4	46	1.20
111178--111232	27	2.0	27	82	0	65	45	0	3	50	1.19
111635--111685	21	2.5	20	78	15	59	50	3	1	43	1.31
111822--111856	17	2.1	17	94	0	61	37	0	0	62	0.95
112049--112196	73	2.1	67	79	13	149	48	2	2	47	1.24
112162--112196	12	2.9	12	87	12	54	51	0	0	48	1.00
112313--112343	16	1.9	16	100	0	62	48	12	0	38	1.42
112301--112346	24	1.9	24	90	0	74	47	8	0	43	1.34
112341--112380	11	3.3	13	80	16	50	40	0	2	57	1.12
112354--112398	19	2.4	18	85	10	63	37	0	0	62	0.96
113428--113487	16	3.8	15	73	18	59	48	1	0	50	1.11
113608--113651	17	2.6	17	89	3	54	38	0	6	54	1.27
113941--113972	15	2.1	16	94	5	57	53	0	0	46	1.00
113941--113984	16	2.8	16	86	10	56	50	2	0	47	1.13
114637--114685	18	2.7	19	87	9	68	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
114640--114687	21	2.3	20	78	3	51	45	0	0	54	0.99
116440--116480	18	2.5	17	80	11	50	43	0	4	51	1.23
116739--116797	18	3.2	18	81	11	66	38	3	8	49	1.50
117178--117608	181	2.4	182	84	2	553	42	9	7	40	1.66
118043--118084	6	7.3	6	81	10	52	45	0	0	54	0.99
118051--118084	16	2.1	17	94	5	61	44	0	0	55	0.99
118387--118454	35	1.9	35	85	5	93	48	5	0	45	1.26
118641--118689	24	2.0	25	88	4	73	44	0	8	46	1.33
118649--118713	24	2.7	25	84	11	75	47	0	3	49	1.17
118736--118773	12	2.9	13	84	11	51	57	0	0	42	0.98
118984--119090	53	2.0	55	85	3	146	45	9	10	34	1.70
119397--119468	36	2.0	36	94	0	126	37	9	1	51	1.44
119472--119540	25	2.4	28	75	22	72	42	2	0	55	1.15
119546--119594	19	2.8	18	85	11	59	53	0	0	46	1.00
119601--119636	19	1.9	18	88	5	54	44	5	0	50	1.25
119523--119633	55	2.0	56	81	11	131	53	0	0	45	1.06
119801--119849	21	2.3	22	79	10	57	59	0	0	40	0.98
120773--120815	19	2.2	20	91	4	70	48	0	4	46	1.22
120773--120858	19	4.1	21	74	15	65	46	2	5	45	1.40
120908--120957	23	2.1	25	85	7	68	46	2	0	52	1.12
120947--121013	26	2.5	26	76	9	73	35	1	4	58	1.28
120948--121015	27	2.4	29	73	11	70	35	1	4	58	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
121732--122028	157	1.9	156	87	2	434	41	6	10	41	1.66
122268--122310	19	2.1	19	83	12	50	51	0	2	46	1.13
122287--122339	16	3.1	18	79	20	69	43	3	1	50	1.30
122419--122450	13	2.4	13	94	5	55	40	0	0	59	0.97
123373--123419	21	2.1	21	84	11	58	48	2	0	48	1.13
123443--123496	19	3.2	18	75	24	64	57	5	1	35	1.33
123448--123504	15	3.7	15	72	23	55	57	5	1	35	1.31
123722--124160	181	2.4	181	80	4	474	39	10	10	39	1.73
124412--125206	180	4.4	181	80	5	801	40	9	8	40	1.69
126027--126051	8	3.1	8	100	0	50	36	0	0	64	0.94
126203--126259	9	6.9	8	75	13	53	47	1	1	49	1.22
126201--126276	25	3.0	24	77	15	73	46	1	2	50	1.24
126210--126257	16	2.9	16	78	12	53	50	2	2	45	1.25
126968--127004	14	2.7	14	84	15	51	54	0	0	45	1.00
127200--127258	19	3.3	19	71	24	56	45	0	1	52	1.10
127775--129487	181	9.6	180	73	9	1015	40	8	9	41	1.68
128209--129190	537	1.8	534	80	6	1198	41	8	9	40	1.68
128364--129033	356	1.9	354	80	6	800	41	8	8	41	1.66
129663--129687	12	2.1	12	100	0	50	60	0	0	40	0.97
129676--129764	21	4.2	20	71	22	67	47	2	1	49	1.21
129664--129764	36	2.9	35	75	10	100	48	1	0	48	1.19
130103--130156	22	2.5	23	82	8	69	57	1	0	40	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
130287--130311	13	1.9	13	100	0	50	40	8	0	52	1.31
130574--130608	18	1.9	18	94	0	61	54	0	0	45	0.99
130576--130651	25	3.1	25	79	9	77	52	3	0	43	1.19
130589--130635	13	3.6	14	78	18	57	51	4	0	44	1.21
130567--130657	47	2.0	44	81	12	103	53	4	0	41	1.21
131639--131695	30	1.9	30	85	0	78	40	3	0	56	1.17
131779--131832	26	2.1	26	82	6	65	50	1	0	48	1.11
132407--132464	29	2.0	28	83	9	73	48	0	0	51	1.00
132407--132450	14	3.1	14	81	12	54	54	0	0	45	0.99
132558--132592	16	2.2	16	90	5	54	40	8	8	42	1.66

Tables:   1   2   3   4