genome.fa.s512.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168337.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_56, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  149304

Tables:   1   2   3   4   

This is table  3  of  4  ( 405 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
95957--95990	18	1.9	17	88	5	50	50	2	5	41	1.42
96071--96120	26	2.0	25	84	11	66	58	0	4	38	1.17
96668--96706	19	2.1	19	85	0	51	41	10	7	41	1.68
98142--98214	21	3.6	19	75	17	58	13	27	30	28	1.94
98160--98215	20	2.8	20	83	2	67	12	25	33	28	1.92
98991--99039	24	2.1	23	85	7	64	42	0	6	51	1.27
100193--100254	27	2.3	28	86	10	85	43	1	3	51	1.27
100325--100377	18	3.0	18	75	10	56	49	1	0	49	1.12
100332--100385	17	3.1	17	77	15	56	50	1	1	46	1.23
100792--100885	16	5.7	16	69	22	61	48	2	0	48	1.13
100764--100863	51	2.0	50	81	13	116	51	2	0	47	1.12
101207--101252	21	2.1	22	84	4	58	39	2	0	58	1.10
101420--101480	30	2.1	30	84	9	81	55	1	0	42	1.09
102197--102234	7	5.3	7	96	3	67	55	0	0	44	0.99
103730--103900	85	2.0	84	80	11	190	47	2	0	48	1.21
103851--103903	17	3.1	17	79	12	56	54	1	0	43	1.11
103843--103908	22	3.0	22	83	12	75	54	1	0	43	1.09
104040--104064	13	1.9	13	100	0	50	40	8	0	52	1.31
104917--105067	18	8.1	18	65	20	53	45	2	3	49	1.32
105035--105145	14	7.2	15	70	24	56	44	0	3	51	1.25
106800--106930	6	22.2	6	66	22	55	44	0	3	51	1.19
107788--107875	35	2.5	35	74	9	90	51	2	4	42	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108985--109036	17	3.1	17	80	5	52	48	1	1	48	1.24
109162--109232	32	2.2	32	80	11	83	49	1	4	45	1.30
109189--109259	29	2.4	29	79	9	74	52	0	2	45	1.15
109440--109478	19	2.1	19	85	9	53	38	0	0	61	0.96
110092--110541	181	2.5	181	79	5	464	42	7	8	41	1.63
110873--110924	8	6.1	8	79	6	50	48	1	0	50	1.12
110979--111017	17	2.3	16	86	8	51	51	0	2	46	1.14
110975--111061	41	2.1	42	85	12	119	50	0	4	44	1.22
111428--111471	18	2.4	18	80	0	52	45	2	2	50	1.27
112064--112109	23	2.0	24	86	4	67	45	2	2	50	1.26
112125--112185	24	2.6	24	81	2	70	45	3	3	47	1.35
112125--112190	23	2.8	24	82	8	66	46	3	4	45	1.38
112398--112435	18	2.1	19	85	5	51	42	5	5	47	1.48
113991--114038	13	3.4	14	80	16	55	47	0	2	50	1.12
113988--114081	18	5.6	18	70	25	57	48	1	1	48	1.15
114087--114158	36	1.9	38	84	15	98	47	0	2	50	1.15
114190--114248	22	2.7	23	78	7	59	47	1	1	49	1.21
114279--114330	21	2.3	21	87	9	68	34	0	7	57	1.27
114296--114338	21	2.1	21	86	4	61	37	2	6	53	1.41
114381--114496	23	4.8	24	69	19	71	48	2	0	48	1.21
114406--114440	14	2.6	13	86	8	52	57	2	0	40	1.14
114468--114544	29	2.6	29	79	6	82	48	0	3	48	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
115216--115253	12	3.2	12	85	11	51	47	0	2	50	1.15
115424--115466	22	2.0	22	86	9	61	39	0	6	53	1.28
115584--115641	10	5.8	10	77	6	64	46	1	0	51	1.11
115583--115629	19	2.6	17	83	10	58	44	2	0	53	1.12
116122--116183	19	3.2	20	71	8	58	48	1	0	50	1.10
117258--117349	6	15.5	6	69	25	54	46	2	1	50	1.20
117321--117382	19	3.4	19	72	22	69	46	1	0	51	1.10
117323--117454	35	3.8	34	74	21	96	48	1	0	49	1.15
117388--117464	22	3.2	23	76	20	68	53	1	0	45	1.08
117389--117454	19	3.8	18	76	17	68	53	1	0	45	1.09
117569--117619	21	2.7	18	77	22	52	52	1	0	45	1.12
117771--117823	21	2.5	22	75	19	60	45	1	5	47	1.37
117793--117838	15	3.1	15	82	11	51	47	0	2	50	1.13
117762--117901	66	2.1	67	80	16	161	45	1	4	49	1.30
118102--118158	16	3.6	16	80	15	57	47	0	0	52	1.00
118253--118286	16	2.1	16	88	0	50	47	0	5	47	1.26
118776--118860	17	4.7	17	71	22	57	50	3	3	42	1.36
119617--119674	14	4.2	15	75	18	63	46	1	1	50	1.22
119995--120044	26	1.9	26	83	0	64	48	4	2	46	1.32
120449--120486	12	3.2	12	85	11	51	47	0	2	50	1.15
120820--120877	10	5.8	10	77	6	64	46	1	0	51	1.11
120819--120865	19	2.6	17	83	10	58	44	2	0	53	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
121450--121493	13	3.2	13	83	6	52	47	0	6	45	1.29
121527--121585	31	1.9	31	86	13	86	45	0	3	50	1.18
121726--121760	17	2.1	16	89	5	52	45	0	2	51	1.16
121790--121825	18	1.9	19	94	5	65	38	5	11	44	1.63
121990--122038	14	3.3	14	76	15	53	51	2	0	46	1.12
122484--122553	25	2.9	25	82	14	76	42	2	1	52	1.24
122688--122716	12	2.3	13	94	5	51	58	0	0	41	0.98
122844--122891	13	3.5	13	78	18	53	56	2	0	41	1.11
122844--122895	3	16.7	3	76	7	50	57	1	0	40	1.10
122844--122899	28	2.0	27	86	10	78	55	1	0	42	1.10
122865--122907	19	2.5	17	81	11	52	51	0	0	48	1.00
122846--122907	25	2.5	25	77	15	65	53	1	0	45	1.10
122864--122907	22	2.0	22	86	0	61	52	0	0	47	1.00
122891--122959	21	3.2	21	80	15	70	42	0	1	56	1.08
123065--123120	15	3.5	16	70	18	53	51	0	1	46	1.11
123055--123139	32	2.5	35	79	14	106	49	0	3	47	1.18
123353--123426	36	2.1	36	94	0	130	39	4	6	50	1.48
123396--123736	179	1.9	181	80	4	395	39	7	10	42	1.67
124040--124092	24	2.2	25	74	12	58	43	1	0	54	1.11
123900--124745	181	4.8	164	74	13	474	40	7	9	42	1.66
124033--124745	181	3.9	181	80	3	781	40	7	9	42	1.66
124284--125203	482	1.9	482	78	7	990	41	9	10	38	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
124880--125416	181	3.0	178	75	11	504	41	10	10	37	1.73
125375--125407	18	1.9	17	88	11	50	48	6	6	39	1.53
125370--125416	19	2.7	18	80	12	62	44	4	10	40	1.59
125427--126344	181	5.1	181	77	6	827	41	9	8	40	1.67
126216--126491	137	2.0	141	80	7	312	40	9	7	42	1.65
126359--127760	181	7.9	178	74	9	828	42	9	8	40	1.68
126359--128129	363	4.9	357	74	9	1137	41	9	7	40	1.67
127740--127784	19	2.4	19	88	0	72	35	13	6	44	1.70
128544--128582	17	2.2	18	90	4	62	64	0	0	35	0.94
128597--128621	13	1.9	13	100	0	50	56	4	0	40	1.18
128869--128921	14	3.4	15	78	21	56	49	1	1	47	1.23
129048--129114	26	2.5	26	76	9	73	35	1	4	58	1.28
129049--129116	27	2.4	29	73	11	70	35	1	4	58	1.27
129149--130266	181	6.1	180	75	9	747	40	7	9	43	1.65
130265--130308	14	3.1	14	83	6	61	52	0	0	47	1.00
130574--131179	181	3.4	182	79	5	594	41	10	7	40	1.67
131145--131274	65	2.0	67	89	8	205	36	15	6	42	1.72
131273--131384	54	2.0	56	96	3	210	48	5	7	39	1.54
132820--133479	181	3.6	181	78	7	696	43	7	7	40	1.62
133513--133581	18	3.7	18	72	14	59	49	4	0	46	1.21
134909--135447	278	1.9	279	91	3	881	29	13	11	46	1.78
135554--135597	22	2.0	22	90	0	70	43	15	11	29	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
135816--135842	14	1.9	14	100	0	54	14	14	14	55	1.70
135850--136441	180	3.3	179	79	6	531	39	9	8	41	1.69
136467--137037	179	3.2	177	80	7	591	41	9	8	41	1.67
135827--137245	631	2.3	598	91	4	2261	39	9	8	41	1.69
137923--137959	14	2.4	16	91	8	60	54	0	2	43	1.14
138064--138133	15	4.6	15	77	19	65	47	1	0	51	1.09
138217--138282	15	4.3	15	71	27	57	48	6	0	45	1.27
138403--138437	17	2.1	17	94	0	61	51	0	0	48	1.00
139043--139087	23	2.0	22	87	12	65	60	0	2	37	1.09
139251--139283	17	1.9	17	88	11	50	39	0	0	60	0.97

Tables:   1   2   3   4