genome.fa.s568.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168393.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_61, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  142147

Tables:   1   2   3   4   5   

This is table  2  of  5  ( 502 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30844--30884	18	2.2	19	80	16	50	48	0	2	48	1.14
30851--30887	9	3.8	10	86	13	51	51	0	0	48	1.00
30937--31319	182	2.1	182	82	4	461	39	8	9	43	1.67
31525--31864	177	1.9	181	83	5	440	42	8	9	39	1.68
31925--32985	180	5.9	175	71	12	424	38	8	10	42	1.70
32001--32996	544	1.8	538	79	8	1162	38	8	10	42	1.71
33052--34689	180	9.1	180	75	7	1112	41	8	9	39	1.69
33052--36744	360	10.4	358	74	10	2331	41	8	9	40	1.68
33113--36616	180	19.8	168	70	14	862	41	8	9	40	1.68
35321--35358	19	2.0	19	89	0	58	39	2	13	44	1.57
35371--36601	181	6.8	179	74	9	675	40	8	9	41	1.68
35371--36698	546	2.5	538	79	6	1253	40	8	9	42	1.68
37009--38244	180	6.9	180	75	9	910	40	8	10	41	1.68
37009--38244	361	3.4	355	77	8	1117	40	8	10	41	1.68
38259--39503	181	7.0	179	75	9	856	40	8	9	41	1.67
39105--39136	17	1.9	16	93	6	55	53	6	3	37	1.42
39006--39320	172	1.8	171	82	6	404	42	8	8	39	1.67
38354--39492	353	3.2	354	77	7	907	40	8	9	41	1.68
39522--39579	16	3.4	16	77	13	62	48	0	0	51	1.00
39548--39585	20	1.9	20	89	10	60	50	0	0	50	1.00
39588--39621	16	2.1	16	89	10	52	58	2	0	38	1.13
39752--39804	19	2.7	20	75	21	58	47	0	1	50	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40280--41456	177	6.6	176	75	8	872	40	7	10	41	1.68
42037--42082	21	2.1	22	84	4	58	58	2	2	36	1.22
43317--43365	23	2.1	24	85	11	66	48	2	0	48	1.12
43342--43376	14	2.6	13	86	8	52	57	2	0	40	1.14
43407--43463	28	2.1	26	83	6	69	47	0	3	49	1.18
43407--43443	18	1.9	19	89	10	58	48	0	2	48	1.15
43413--43457	18	2.6	18	77	22	51	46	0	0	53	1.00
43415--43470	28	2.0	28	86	13	80	48	0	1	50	1.11
43901--43947	23	2.0	23	83	0	58	51	0	0	48	1.00
44166--44229	24	2.8	23	79	11	69	45	3	3	48	1.34
44166--44238	23	3.1	24	80	9	71	43	2	2	50	1.30
44216--44261	18	2.6	18	83	16	60	45	0	0	54	0.99
44272--44306	18	1.9	18	94	0	61	48	0	0	51	1.00
44424--44484	26	2.2	28	82	8	72	47	0	3	49	1.18
44715--44757	21	2.0	21	82	8	52	48	2	2	46	1.27
44784--44808	13	1.9	13	100	0	50	40	0	0	60	0.97
45136--45189	25	2.2	25	83	12	67	53	0	3	42	1.18
45392--45460	18	3.6	20	74	14	65	52	2	0	44	1.16
45425--45454	15	2.0	15	93	0	51	50	0	0	50	1.00
45410--45480	24	2.8	24	77	10	70	53	1	0	45	1.09
45570--45615	22	2.2	20	84	7	56	41	0	2	56	1.11
46217--46246	15	2.1	14	93	6	51	43	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46859--46913	25	2.2	25	83	6	67	49	1	0	49	1.11
46986--47057	36	2.0	36	86	8	101	48	4	0	47	1.21
47160--47227	19	3.7	19	79	12	63	47	0	2	50	1.16
47188--47257	20	3.4	19	84	11	86	47	0	5	47	1.26
47180--47257	19	3.9	19	79	20	72	46	0	5	48	1.24
47501--47541	21	1.9	22	85	5	57	43	0	2	53	1.13
47676--47764	40	2.1	46	85	12	127	40	2	2	55	1.25
47694--47779	21	4.0	21	70	14	59	45	2	2	50	1.27
47847--47906	30	2.0	31	83	9	79	48	1	3	46	1.28
48327--48408	27	3.0	27	77	10	71	48	3	1	46	1.27
49349--49413	26	2.5	25	74	18	60	53	1	1	43	1.19
49647--49739	39	2.2	40	80	14	100	43	1	3	52	1.24
49716--49766	17	3.2	16	75	16	52	39	0	0	60	0.97
49683--49778	7	13.9	7	72	12	65	41	1	1	56	1.13
49740--49811	26	2.8	25	77	14	65	45	4	1	48	1.30
49917--49981	24	2.7	24	79	9	69	52	0	1	46	1.10
50015--50058	22	2.0	22	86	8	63	50	0	0	50	1.00
50116--50144	14	2.0	15	93	6	51	68	3	0	27	1.05
50987--51015	15	1.9	15	100	0	58	41	3	6	48	1.47
51942--51985	18	2.2	20	80	15	56	56	0	0	43	0.99
51953--52030	36	2.3	34	76	14	81	47	0	3	48	1.20
51953--52030	18	4.6	17	74	13	63	47	0	3	48	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52175--52230	24	2.5	23	86	11	73	50	0	5	44	1.25
52720--52755	18	1.9	19	88	5	56	38	2	0	58	1.13
53256--53353	25	3.6	25	71	25	65	47	0	1	51	1.07
53311--53387	19	3.8	22	74	14	60	45	0	1	53	1.08
53311--53365	5	10.8	5	75	16	51	43	0	1	54	1.10
53249--53384	32	4.4	31	72	18	106	48	0	1	50	1.10
53442--53487	15	2.9	16	75	15	51	50	0	0	50	1.00
53669--53729	25	2.7	22	78	16	63	50	0	0	49	1.00
53682--53716	18	1.9	18	88	11	54	48	0	0	51	1.00
53678--53729	22	2.5	20	79	14	59	50	0	0	50	1.00
53954--54366	182	2.3	182	80	5	444	38	8	10	42	1.69
54512--55977	181	8.1	181	77	6	1111	40	8	9	41	1.67
54519--55894	540	2.6	537	78	6	1302	39	8	9	42	1.67
54512--55892	358	3.8	353	74	7	1062	40	7	9	42	1.67
57066--57129	26	2.5	26	82	10	78	51	1	0	46	1.10
57106--57176	36	2.0	36	81	10	83	45	1	4	49	1.30
58196--58241	10	4.4	10	81	10	56	56	0	2	41	1.11
58200--58242	16	2.7	15	82	7	50	58	0	2	39	1.11
58198--58270	22	3.2	22	81	11	67	52	0	2	45	1.15
58336--58390	22	2.4	24	82	11	62	49	3	1	45	1.30
58724--59191	183	2.6	176	79	7	503	38	12	8	40	1.74
59061--59358	157	1.9	157	80	7	347	40	13	7	39	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59742--59779	19	2.0	19	89	0	58	47	0	0	52	1.00
59788--59836	24	2.0	24	84	7	64	57	2	2	38	1.22
60187--60229	22	2.0	22	86	9	61	39	0	6	53	1.28
60388--60443	27	2.1	27	83	6	69	53	1	1	42	1.21
60905--60948	15	2.8	16	80	19	56	38	4	0	56	1.20
61244--61277	17	1.9	18	88	5	52	41	0	0	58	0.98
61589--62071	176	2.7	178	78	7	467	43	10	7	38	1.67
62236--62273	17	2.2	17	86	9	51	47	0	2	50	1.15
62348--62385	14	2.4	16	87	12	53	47	0	0	52	1.00
62783--62821	15	2.6	15	83	0	51	56	5	0	38	1.22
62789--62827	18	2.1	19	90	4	62	53	2	0	43	1.14
62995--63119	13	9.5	13	66	21	57	52	1	1	44	1.20
62993--63040	17	3.1	17	80	14	50	50	0	0	50	1.00
62998--63080	25	3.1	25	80	15	78	51	0	1	46	1.08
63494--63531	19	2.0	20	89	5	60	42	0	0	57	0.98
63476--63535	11	5.9	11	72	21	51	43	0	0	56	0.99
63674--63724	16	3.1	16	75	24	52	41	0	1	56	1.10
63663--63726	23	3.0	22	76	17	73	46	0	1	51	1.10
63672--63725	20	3.0	19	82	17	71	42	0	1	55	1.10
64004--64503	180	2.8	182	82	6	498	44	9	8	38	1.66
65105--65207	6	16.8	6	66	18	52	46	2	2	47	1.32
65175--65209	17	2.0	17	88	5	52	54	0	0	45	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65250--65324	15	5.1	15	75	18	61	56	0	0	44	0.99
65355--65384	11	2.7	11	94	0	51	46	3	6	43	1.46
66366--66751	181	2.1	178	82	7	467	36	6	10	45	1.65
66757--66788	13	2.3	15	89	10	50	53	0	0	46	1.00
66757--66823	14	4.8	14	78	9	57	47	1	0	50	1.10
68640--68668	11	2.6	11	100	0	58	37	0	0	62	0.96
68871--69766	181	5.0	181	79	6	840	42	10	7	39	1.67
68921--69766	362	2.3	361	82	5	969	43	10	7	39	1.66
71838--71910	37	2.0	37	86	5	103	49	0	0	50	1.00
71826--71874	24	2.0	23	88	11	71	53	0	2	44	1.12

Tables:   1   2   3   4   5