genome.fa.s568.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_019168393.1 Durio zibethinus cultivar Musang King isolate D1 unplaced genomic scaffold, Duzib1.0 scaffold_61, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  142147

Tables:   1   2   3   4   5   

This is table  4  of  5  ( 502 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
98748--98809	29	2.2	27	83	8	79	50	1	0	48	1.10
99471--99503	15	2.3	14	94	5	57	39	0	0	60	0.97
99471--99521	24	2.1	24	82	7	59	43	0	3	52	1.19
100983--101033	25	2.0	25	85	7	68	50	0	0	49	1.00
101479--101540	21	3.0	21	84	11	74	43	1	1	53	1.20
101513--101546	17	2.0	17	88	11	52	41	5	0	52	1.25
101981--102025	24	2.0	22	83	16	56	57	2	2	37	1.23
102374--102427	15	3.7	15	76	13	60	44	0	0	55	0.99
102855--102918	20	3.0	22	80	8	55	48	1	0	50	1.10
102867--102958	20	4.7	20	73	21	79	48	1	0	50	1.08
102879--102906	14	2.0	14	100	0	56	50	0	0	50	1.00
103195--103259	18	3.5	19	74	17	64	47	0	4	47	1.22
103312--103340	14	2.0	15	93	6	51	27	0	3	68	1.05
103347--103378	15	2.1	15	94	0	55	56	0	0	43	0.99
103485--103550	12	5.7	12	75	12	57	54	1	3	40	1.25
104220--104253	16	2.1	16	94	0	59	44	2	0	52	1.16
104503--104541	15	2.8	13	82	14	51	48	0	5	46	1.24
104644--104690	18	2.5	19	86	3	60	53	0	6	40	1.27
104692--104755	22	2.9	22	76	6	58	53	1	0	45	1.10
104926--104967	14	3.1	14	76	16	52	47	0	7	45	1.30
105563--105643	30	2.6	30	78	18	87	45	2	4	46	1.37
105625--105669	11	3.6	12	78	21	56	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
105622--105737	16	7.4	16	66	24	52	51	2	0	44	1.21
105769--105814	25	1.9	23	83	16	58	36	0	6	56	1.25
106096--106148	15	3.5	15	82	10	56	49	1	0	49	1.12
106105--106150	23	2.0	24	86	4	67	47	2	0	50	1.13
106251--106298	16	3.3	14	78	18	53	60	2	2	35	1.20
107200--107250	23	2.2	23	82	6	59	52	0	1	45	1.12
107274--107324	9	5.1	10	78	21	54	52	0	0	47	1.00
107279--107322	23	2.0	23	95	4	81	54	0	0	45	0.99
107360--108356	182	5.5	180	76	7	561	41	8	9	41	1.67
108393--109449	177	5.9	175	71	12	512	38	8	10	42	1.70
108459--109449	179	5.5	173	72	12	514	38	8	10	41	1.71
109773--111185	538	2.6	537	77	6	1152	41	9	9	39	1.69
110688--111165	178	2.7	177	79	5	466	43	8	8	39	1.66
111042--111498	163	2.9	156	76	15	460	43	7	8	41	1.62
111803--111840	19	2.0	19	89	0	58	39	2	13	44	1.57
111937--112543	175	3.4	176	77	9	472	41	8	9	41	1.66
111814--113225	181	7.8	180	74	7	884	40	8	9	41	1.67
113490--114723	180	6.9	180	75	8	984	39	7	10	42	1.68
113490--114723	360	3.4	356	79	6	1197	39	7	10	42	1.68
114734--115331	181	3.3	179	78	8	594	38	6	9	44	1.64
114734--115445	359	2.0	356	78	6	749	39	8	10	41	1.69
115957--116006	19	2.6	20	81	15	61	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
116011--116044	16	2.1	16	89	10	52	58	2	0	38	1.13
116175--116227	19	2.7	20	75	21	58	47	0	1	50	1.12
116606--117713	177	6.2	180	76	8	838	40	7	10	41	1.68
116606--117713	539	2.1	535	79	7	1147	40	7	10	41	1.68
118107--118142	14	2.5	15	91	8	58	52	0	0	47	1.00
118300--118345	21	2.1	22	84	4	58	58	2	2	36	1.22
119681--119734	25	2.2	26	87	12	87	44	0	0	55	0.99
119855--119912	29	2.1	29	81	9	68	44	3	1	50	1.29
119951--119983	11	3.0	11	95	0	57	45	3	9	42	1.51
120102--120148	23	2.0	23	83	0	58	51	0	0	48	1.00
120400--120448	20	2.4	20	80	13	55	42	2	4	51	1.32
120409--120467	20	3.0	20	79	16	54	42	0	3	54	1.17
120413--120530	18	6.2	18	73	21	73	45	0	2	51	1.14
120592--120663	14	5.2	14	76	17	62	47	0	5	47	1.25
120893--120942	5	10.0	5	77	14	50	54	2	2	42	1.23
120862--120942	24	3.3	23	69	24	58	51	2	3	41	1.32
120973--120997	13	1.9	13	100	0	50	40	0	0	60	0.97
121576--121644	20	3.6	20	76	7	63	53	2	0	43	1.15
121597--121642	25	1.9	23	86	8	65	52	2	0	45	1.13
121609--121638	15	2.0	15	93	0	51	50	0	0	50	1.00
121594--121664	24	2.8	24	77	10	70	53	1	0	45	1.09
121754--121799	22	2.2	20	84	7	56	41	0	2	56	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
122823--122896	17	4.4	16	76	15	62	45	0	2	51	1.15
122815--122912	51	1.9	51	81	8	119	47	1	3	47	1.24
123160--123230	36	1.9	36	83	8	90	47	2	0	49	1.16
123189--123254	15	4.3	15	75	21	66	42	3	0	54	1.15
123438--123472	14	2.5	14	90	0	52	42	2	5	48	1.41
123658--123714	21	2.8	19	73	14	60	42	1	1	54	1.21
123971--124030	30	2.0	31	83	9	79	48	1	3	46	1.28
124453--124500	14	3.5	14	75	13	55	56	0	0	43	0.99
124448--124503	17	3.5	17	74	16	57	53	0	0	46	1.00
124496--124551	27	2.1	27	83	6	69	42	5	1	50	1.35
124939--125033	34	2.7	35	78	16	83	47	1	3	48	1.24
125181--125530	180	1.9	179	82	2	425	40	9	8	41	1.67
125515--125579	26	2.5	25	74	18	60	53	0	1	44	1.09
125681--125716	16	2.2	16	90	0	54	41	0	0	58	0.98
125772--125840	19	3.6	19	75	12	70	49	1	0	49	1.09
125780--125840	26	2.5	24	76	19	63	50	1	0	47	1.10
126275--126339	26	2.5	26	76	18	64	49	0	3	47	1.17
126283--126346	26	2.5	24	72	20	58	45	0	4	50	1.22
126518--126555	20	1.9	20	89	10	60	42	5	0	52	1.24
126515--126572	26	2.3	26	80	11	68	43	6	0	50	1.29
126678--126719	16	2.5	17	81	18	52	42	0	0	57	0.99
126791--126834	22	2.0	22	86	8	63	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
126790--126840	13	3.6	14	75	15	52	50	0	0	49	1.00
126892--126920	14	2.0	15	93	6	51	68	3	0	27	1.05
127422--127463	19	2.2	18	84	16	50	54	4	0	40	1.21
127646--127683	17	2.2	17	86	9	51	42	0	2	55	1.14
128018--128152	38	3.8	37	72	18	94	54	0	0	44	1.10
128073--128145	26	2.8	25	77	12	58	54	0	1	43	1.08
128063--128153	31	2.8	32	78	15	98	53	0	1	45	1.07
128591--128645	27	2.0	27	82	0	65	45	3	1	49	1.30
128760--128806	10	4.9	10	76	10	53	48	2	0	48	1.13
129050--129161	50	2.2	51	78	13	117	43	0	3	51	1.25
129065--129159	16	5.6	17	70	23	58	42	1	3	53	1.23
129543--129567	12	2.1	12	100	0	50	60	0	0	40	0.97
129653--129709	28	2.1	28	81	9	66	43	0	1	54	1.10
129828--129864	17	2.1	18	90	5	58	54	2	2	40	1.29
129906--129962	26	2.2	26	84	6	71	47	1	1	49	1.22
129919--129951	17	2.0	16	94	5	57	48	0	0	51	1.00
130014--130048	15	2.3	15	85	0	52	40	0	0	60	0.97
130057--130129	28	2.6	29	75	14	80	50	0	1	47	1.09
130117--130165	20	2.6	18	81	15	55	42	2	2	53	1.24
130117--130172	17	3.1	17	80	12	51	44	1	1	51	1.22
130149--130189	16	2.6	16	88	0	55	53	2	0	43	1.13
130391--130435	13	2.9	16	75	21	51	42	0	2	55	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
130560--130651	21	4.1	22	75	19	84	54	0	1	44	1.07
130563--130657	13	7.6	13	72	25	57	53	0	1	45	1.07
130591--130684	35	2.8	35	79	17	85	54	1	1	43	1.14
130919--130964	15	3.0	15	87	3	65	50	0	0	50	1.00
130998--131035	18	2.1	19	85	5	51	42	5	5	47	1.48
131616--131834	59	3.8	57	86	7	289	34	13	7	44	1.72
131617--131849	60	3.9	59	85	7	303	33	12	8	45	1.72
131616--131834	119	1.9	117	90	3	350	34	13	7	44	1.72
131861--131900	20	2.0	21	95	5	73	75	0	2	22	0.93
131867--131931	10	6.3	10	75	5	58	76	1	3	18	0.99

Tables:   1   2   3   4   5