genome.fa.s1120.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold214
Parameters: 2 7 7 80 10 50 1000
Length:  1307275

Tables:   1   2   3   4   5   

This is table  2  of  5  ( 503 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
251568--251681	50	2.3	50	100	0	228	38	35	0	25	1.56
251972--252281	41	7.8	40	75	14	200	34	25	19	20	1.96
252112--252245	70	1.9	70	89	6	209	33	26	22	17	1.96
252071--252281	111	1.9	111	87	1	307	34	25	20	19	1.96
256176--256227	26	2.0	26	84	0	68	34	19	15	30	1.93
259336--259548	106	2.0	107	99	0	419	35	13	13	38	1.83
269534--269582	20	2.5	20	81	15	66	12	24	6	57	1.58
278174--278213	6	6.7	6	88	11	64	17	0	0	82	0.67
278130--278740	298	2.0	305	89	4	932	25	14	16	43	1.85
280414--280439	12	2.2	12	100	0	52	23	11	7	57	1.59
294580--294616	18	2.0	19	89	5	58	70	0	2	27	1.01
300852--301002	35	4.3	35	80	1	142	37	30	12	19	1.89
300842--301002	70	2.3	69	80	2	187	38	31	11	18	1.87
317440--317469	12	2.5	12	94	0	51	6	20	40	33	1.78
318476--318534	31	1.9	30	83	10	75	37	13	6	42	1.71
337585--337634	3	16.7	3	95	0	91	32	0	34	34	1.58
338384--338549	87	1.9	86	88	3	253	36	22	15	25	1.94
345179--345231	24	2.2	24	96	0	97	22	13	22	41	1.88
350299--350332	16	2.1	17	88	5	52	76	11	0	11	1.02
355767--355816	20	2.5	20	80	0	64	42	20	12	26	1.86
373609--373645	3	12.3	3	94	0	65	32	2	0	64	1.07
385889--385948	22	2.6	22	82	10	68	35	31	5	28	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
392986--393128	71	2.0	71	91	2	234	32	9	6	52	1.58
393631--393682	22	2.5	20	82	11	68	50	13	11	25	1.75
393960--393987	14	2.0	14	100	0	56	14	14	28	42	1.84
394658--394687	11	2.6	12	89	10	53	56	0	0	43	0.99
395905--395942	20	1.9	20	94	0	67	65	10	2	21	1.35
413896--413924	8	3.6	8	100	0	58	79	0	0	20	0.74
414294--414323	9	3.2	9	95	4	51	76	0	13	10	1.01
420869--420913	22	2.0	24	82	8	58	31	24	6	37	1.81
423362--423395	17	2.0	18	88	11	54	41	0	17	41	1.50
433506--433597	25	3.7	24	81	5	103	26	22	22	28	1.99
436325--436354	15	1.9	16	93	6	53	43	0	0	56	0.99
443273--443341	24	3.0	23	83	16	81	5	18	1	73	1.10
443305--443344	19	2.1	19	86	9	55	5	17	0	77	0.94
459797--459863	25	2.7	25	80	0	71	25	23	22	28	1.99
466969--466999	8	3.9	8	91	0	53	51	0	12	35	1.40
467469--467560	25	3.7	25	82	4	89	27	26	13	33	1.93
467528--467595	25	2.7	25	88	0	91	26	23	20	29	1.99
472209--472343	50	2.7	50	83	0	171	22	27	22	27	1.99
476428--476453	13	2.0	13	100	0	52	38	0	15	46	1.46
477448--477629	45	4.1	45	81	1	215	28	16	23	31	1.96
481018--481193	88	2.0	88	98	0	343	39	13	5	41	1.67
483635--483734	27	3.8	26	78	4	101	21	27	16	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
485397--485467	35	2.0	35	91	0	115	26	9	4	59	1.48
485694--485825	45	2.9	43	83	7	147	24	20	13	41	1.88
489214--489261	17	2.9	17	82	17	57	47	0	0	52	1.00
494540--494578	19	2.1	19	95	0	69	46	10	17	25	1.80
498478--498563	3	28.7	3	70	13	52	33	5	3	56	1.40
498478--498516	14	2.8	14	96	0	69	35	2	0	61	1.10
498478--498517	17	2.4	17	87	8	55	35	2	0	62	1.09
498475--498563	14	6.7	12	72	19	54	34	5	3	56	1.40
498492--498579	30	2.8	31	73	14	83	34	5	3	56	1.39
516044--516104	6	10.3	6	82	8	54	80	9	4	4	1.01
517674--517730	30	1.9	30	100	0	114	38	3	24	33	1.73
518335--519095	131	5.8	131	92	1	1188	28	21	26	24	1.99
519081--519328	44	5.9	42	69	10	148	32	19	20	27	1.97
519343--519506	50	3.3	50	73	10	163	35	25	15	24	1.94
519374--519536	50	3.3	50	68	13	136	37	22	17	22	1.94
519324--519533	100	2.1	100	87	0	303	37	22	16	23	1.94
519344--519568	100	2.2	100	84	1	281	35	23	16	24	1.95
521204--521289	3	28.7	3	70	13	52	33	5	3	56	1.40
521204--521242	14	2.8	14	96	0	69	35	2	0	61	1.10
521204--521243	17	2.4	17	87	8	55	35	2	0	62	1.09
521201--521289	14	6.7	12	72	19	54	34	5	3	56	1.40
521218--521305	30	2.8	31	73	14	83	34	5	3	56	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
522976--523006	4	8.0	4	92	7	55	48	0	0	51	1.00
523092--523313	110	2.0	111	99	0	437	39	2	15	42	1.62
525354--525387	18	1.9	18	88	5	52	8	2	26	61	1.40
527385--527423	20	2.0	20	89	0	60	25	17	7	48	1.74
531196--531240	23	2.0	24	86	8	67	37	2	2	57	1.23
531965--531991	13	2.1	13	100	0	54	40	7	29	22	1.81
532684--532710	3	9.0	3	100	0	54	66	0	0	33	0.92
533206--533408	101	2.0	102	99	0	399	50	7	0	40	1.38
541333--541400	24	2.7	25	75	9	66	32	25	16	26	1.96
541355--541402	24	2.0	24	87	0	69	31	20	14	33	1.93
545393--545433	21	2.0	21	85	9	57	46	17	7	29	1.74
547007--547096	44	2.0	45	95	2	164	43	10	14	32	1.78
548274--548466	97	2.0	97	94	0	341	27	17	21	33	1.96
553780--553840	28	2.2	28	82	5	70	37	0	19	42	1.52
554828--554872	22	2.0	24	86	8	67	40	11	4	44	1.60
555276--555310	5	6.6	5	87	12	52	80	0	0	20	0.72
555271--555307	12	3.2	12	88	11	60	75	0	0	24	0.80
556086--556265	60	3.3	60	69	24	196	58	4	1	35	1.28
556139--556285	35	4.2	34	67	22	97	63	3	1	31	1.19
556072--556286	106	2.0	107	99	0	423	61	3	1	33	1.24
560202--560239	19	2.0	19	90	10	60	39	0	39	21	1.53
563291--563379	28	3.2	28	79	3	90	42	12	21	23	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
564750--564815	31	2.1	31	88	0	96	30	12	7	50	1.67
564762--564822	31	2.0	31	90	0	95	27	11	11	49	1.73
565285--565428	59	2.4	59	85	4	175	47	11	13	27	1.77
570784--570811	6	4.7	6	100	0	56	85	0	14	0	0.59
571654--571742	47	1.9	46	90	2	142	42	20	21	15	1.89
572989--573170	45	4.0	45	89	0	283	31	17	22	28	1.97
573275--573384	44	2.5	44	92	0	175	29	22	23	24	1.99
573926--573983	19	2.7	22	84	10	68	36	8	17	37	1.80
580559--580691	58	2.3	58	88	2	196	24	30	15	30	1.96
585291--585343	21	2.5	21	81	6	63	30	5	32	32	1.81
589179--589240	30	2.1	30	100	0	124	37	9	0	53	1.34
589309--589333	13	1.9	13	100	0	50	12	56	0	32	1.36
591775--591860	22	4.0	22	75	11	70	51	17	31	0	1.46
591776--591855	21	3.8	20	83	9	88	50	17	32	0	1.47
596338--596369	16	2.0	16	100	0	64	43	12	31	12	1.80
598142--598245	51	2.0	52	90	3	165	37	0	15	46	1.53
598238--598284	24	2.0	23	83	4	58	51	2	6	40	1.39
599185--599220	18	2.0	18	94	0	63	27	2	22	47	1.65
599451--599498	21	2.2	21	85	3	60	37	18	16	27	1.92
599460--599501	21	2.0	21	100	0	84	28	19	14	38	1.90
604216--604371	41	3.8	41	77	3	136	28	27	20	23	1.99
619131--619186	21	2.6	22	80	11	71	35	7	32	25	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
619483--619513	14	2.2	14	94	0	53	64	0	35	0	0.94
619628--619661	17	2.0	17	88	0	50	20	8	11	58	1.59
624096--624294	68	3.2	59	71	19	145	50	4	4	41	1.40
624196--624251	25	2.2	27	78	12	64	50	5	1	42	1.35
626997--627029	13	2.5	13	90	0	57	33	6	30	30	1.82
632939--633004	33	2.0	33	100	0	132	42	3	12	42	1.57
639303--639363	30	2.0	30	90	6	97	14	24	27	32	1.95
639371--639403	8	4.2	8	84	7	50	3	21	0	75	0.93
639374--639404	15	2.1	15	93	0	53	3	19	0	77	0.90
643088--643279	42	4.6	42	79	10	196	22	19	18	38	1.93

Tables:   1   2   3   4   5