genome.fa.s1120.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold214
Parameters: 2 7 7 80 10 50 1000
Length:  1307275

Tables:   1   2   3   4   5   

This is table  4  of  5  ( 503 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
891192--891270	14	5.5	15	71	15	51	21	0	32	45	1.52
891217--891271	13	3.8	14	76	13	58	20	0	32	47	1.50
891231--891270	20	2.0	20	85	5	53	20	0	30	50	1.49
891562--891636	22	3.4	21	73	12	53	24	0	41	34	1.55
891564--891627	14	4.5	14	75	11	58	23	0	40	35	1.55
891547--891651	21	5.0	21	72	6	79	22	0	40	35	1.61
896341--896414	21	3.6	21	78	8	80	37	20	39	2	1.67
900717--900784	31	2.2	31	84	5	84	47	8	7	36	1.63
901158--902089	465	2.0	466	99	0	1857	37	12	12	37	1.81
902103--902142	21	1.9	21	89	0	62	55	12	7	25	1.63
902797--902836	2	20.0	2	89	0	62	52	2	0	45	1.14
905252--905299	26	1.9	26	83	8	64	31	10	8	50	1.66
909391--909490	34	2.9	34	85	2	139	32	10	13	45	1.76
914672--914706	17	2.0	18	88	5	54	11	42	31	14	1.81
919066--919093	14	2.0	14	100	0	56	64	0	0	35	0.94
919243--919298	29	2.0	28	82	3	67	44	5	10	39	1.62
922236--922422	83	2.2	81	83	4	230	42	13	9	35	1.76
923355--923427	28	2.5	30	85	12	91	61	4	1	32	1.23
923377--923435	28	2.1	28	81	9	68	64	3	1	30	1.20
929550--929579	1	30.0	1	93	0	51	96	0	3	0	0.21
929550--929590	15	2.7	15	88	7	57	90	0	7	2	0.54
929550--929583	11	3.2	11	95	4	61	94	0	5	0	0.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
931749--931784	18	2.0	18	94	0	63	52	0	38	8	1.32
933698--934011	162	1.9	163	95	1	569	35	14	16	33	1.88
937469--937564	45	2.1	46	86	7	133	43	7	3	45	1.47
940674--940707	17	1.9	18	88	5	52	38	0	8	52	1.33
944420--944461	3	14.3	3	85	5	59	64	2	2	30	1.19
945760--946682	44	20.7	45	73	9	558	27	23	19	30	1.98
945938--946694	178	4.2	178	84	3	824	27	23	18	30	1.97
945892--946685	225	3.6	221	77	8	588	27	23	18	30	1.98
947011--947071	24	2.5	24	89	0	95	27	24	9	37	1.87
948884--948928	6	8.0	6	78	14	51	0	20	0	80	0.72
948885--948928	11	4.0	11	80	11	54	0	20	0	79	0.73
948884--948928	17	2.7	17	82	3	65	0	20	0	80	0.72
948922--948980	29	2.0	29	86	3	82	22	5	6	66	1.36
952988--953012	13	1.9	13	100	0	50	56	0	12	32	1.36
954207--954300	47	2.0	46	91	2	152	31	7	28	31	1.85
964847--964877	16	1.9	16	93	0	53	41	12	3	41	1.59
964753--964997	114	2.1	114	92	1	411	35	15	8	40	1.77
973136--973167	16	2.0	16	93	0	55	31	15	12	40	1.85
979871--979901	16	1.9	16	93	0	53	41	0	38	19	1.51
989587--989616	14	2.1	14	100	0	60	50	6	13	30	1.67
1004748--1004777	14	2.1	14	100	0	60	50	6	13	30	1.67
1009332--1009609	130	2.1	130	97	2	522	30	6	3	59	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1013227--1013259	16	2.1	16	100	0	66	36	30	27	6	1.81
1017423--1017463	20	2.0	20	100	0	82	24	0	14	60	1.34
1017888--1017954	20	3.3	20	87	0	80	35	11	2	49	1.55
1023861--1023896	18	2.1	18	89	5	56	63	8	0	27	1.23
1034047--1034073	3	9.0	3	100	0	54	33	0	0	66	0.92
1039204--1039308	43	2.4	43	80	4	113	26	29	17	26	1.97
1039780--1039847	29	2.4	29	79	13	72	26	25	4	44	1.73
1045611--1045896	67	4.3	67	77	5	267	23	26	17	32	1.96
1048456--1048527	37	1.9	37	100	0	144	41	19	15	23	1.89
1055191--1055299	32	3.5	33	67	14	79	37	21	4	36	1.74
1055702--1055770	32	2.2	32	92	5	113	27	2	21	47	1.65
1056586--1056634	21	2.3	21	85	0	62	30	16	32	20	1.94
1058395--1058550	78	2.0	78	94	0	276	53	10	11	24	1.69
1071171--1071227	28	2.0	28	96	0	105	45	12	21	21	1.83
1076795--1076877	21	4.0	21	82	3	89	45	18	20	15	1.85
1079304--1079358	15	3.6	15	71	20	51	61	0	10	27	1.29
1079802--1079828	2	13.5	2	100	0	54	0	0	51	48	1.00
1081181--1081311	51	2.6	51	80	0	136	36	11	25	25	1.90
1081227--1081326	51	2.0	51	81	0	119	35	14	28	23	1.93
1084221--1084308	23	3.9	23	71	12	65	35	2	21	40	1.66
1084152--1084415	138	1.9	138	92	1	449	32	3	21	41	1.71
1086244--1086308	16	4.4	16	74	21	70	27	26	7	38	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1086248--1086300	26	2.0	26	92	0	88	24	28	7	39	1.82
1093702--1093738	9	4.1	9	92	0	65	45	13	10	29	1.77
1094872--1094905	14	2.4	14	85	0	50	67	5	2	23	1.26
1094956--1094983	1	28.0	1	100	0	56	0	0	0	100	0.00
1098153--1098182	11	2.6	11	94	5	51	36	0	6	56	1.26
1108468--1108512	21	2.1	21	87	0	63	20	17	22	40	1.92
1116096--1116137	18	2.2	20	83	8	52	59	4	7	28	1.44
1116388--1116451	30	2.1	32	82	5	78	26	12	9	51	1.70
1141277--1141354	22	3.5	22	89	3	104	38	10	14	37	1.80
1141489--1141556	22	3.0	22	91	2	100	36	8	14	39	1.78
1141286--1141688	202	2.0	202	99	0	797	32	26	13	27	1.93
1155826--1155899	29	2.5	29	82	4	85	25	14	13	45	1.82
1157356--1157490	43	3.2	43	88	1	191	25	34	20	19	1.96
1157495--1157675	43	4.2	43	89	0	254	30	29	18	20	1.96
1163176--1163232	28	2.0	29	83	10	73	40	38	0	21	1.53
1163210--1163368	82	1.9	82	88	2	239	45	26	1	25	1.64
1163221--1163394	82	2.1	82	83	1	222	47	24	1	26	1.62
1163386--1163464	14	5.6	14	73	10	63	36	39	0	24	1.55
1163470--1163501	14	2.2	15	94	5	57	37	28	0	34	1.57
1163878--1164036	41	3.9	41	94	0	273	28	25	21	24	1.99
1164081--1164159	39	2.0	40	85	5	106	27	26	16	29	1.97
1164088--1164203	40	2.9	40	84	3	137	24	23	19	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1164210--1164235	12	2.2	12	100	0	52	46	30	15	7	1.74
1168442--1168522	30	2.7	30	84	7	103	58	0	2	39	1.12
1168442--1168533	11	8.9	11	74	16	81	57	0	2	40	1.11
1168442--1168544	41	2.5	42	87	4	133	59	0	1	38	1.09
1168443--1168511	9	7.1	9	76	15	66	59	0	0	40	0.97
1168967--1169034	28	2.3	31	82	15	106	30	14	14	39	1.87
1168980--1169036	28	2.0	28	100	0	114	31	14	17	36	1.89
1177675--1177713	16	2.4	16	86	0	51	28	33	2	35	1.71
1177688--1177744	16	3.6	16	90	0	78	33	35	0	31	1.58
1178479--1178528	25	2.0	25	100	0	100	16	40	24	20	1.91
1183493--1183541	19	2.7	18	84	6	55	42	0	2	55	1.11
1187574--1187604	5	6.2	5	92	0	53	19	0	41	38	1.51
1199982--1200033	18	2.8	18	82	2	59	78	7	1	11	1.02
1207455--1207546	25	3.7	24	80	11	105	28	26	21	23	1.99
1215254--1215327	25	3.0	25	82	4	87	28	27	22	21	1.99
1217896--1217931	16	2.2	17	90	5	56	30	0	2	66	1.06
1221173--1221387	85	2.5	84	82	3	261	28	29	18	23	1.97
1221173--1221387	43	5.0	42	82	4	252	28	29	18	23	1.97
1221737--1221777	21	2.0	21	90	0	64	0	39	19	41	1.52
1221738--1221783	21	2.2	21	84	0	56	0	41	19	39	1.52
1227111--1227151	22	1.9	22	85	5	57	36	0	2	60	1.10
1227224--1227355	66	2.0	66	98	0	255	46	15	10	28	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1228150--1228202	24	2.2	24	93	0	88	49	1	5	43	1.37
1228628--1228665	17	2.2	17	95	0	67	39	13	36	10	1.79
1228906--1228973	33	2.1	33	94	0	118	35	27	2	33	1.72
1229595--1229634	15	2.8	14	85	7	53	37	2	35	25	1.69
1229609--1229665	23	2.4	22	80	13	60	36	1	42	19	1.62
1229628--1229681	23	2.3	23	84	6	65	38	1	38	20	1.63
1229888--1229921	12	2.9	11	91	8	50	55	17	17	8	1.66
1229785--1230193	116	3.5	113	77	6	374	34	20	14	31	1.92
1230715--1230777	7	8.7	7	75	6	54	20	1	33	44	1.61
1230715--1230777	29	2.2	29	85	5	83	20	1	33	44	1.61

Tables:   1   2   3   4   5