genome.fa.s1120.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold214
Parameters: 2 7 7 80 10 50 1000
Length:  1307275

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 503 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1231178--1231337	41	3.9	41	88	0	212	26	24	17	31	1.97
1233114--1233164	25	2.0	26	88	3	77	39	9	9	41	1.71
1233270--1233302	17	1.9	17	93	0	57	48	6	0	45	1.27
1233544--1233655	20	6.1	18	72	17	70	52	5	1	40	1.35
1237570--1237620	24	2.1	24	82	7	59	39	1	5	52	1.37
1240917--1240983	34	1.9	35	84	3	91	46	10	10	32	1.72
1244250--1244288	12	3.2	12	96	0	69	20	23	28	28	1.99
1244274--1244412	70	2.0	68	85	2	188	23	18	28	30	1.98
1249459--1249732	51	5.4	50	83	6	313	29	25	16	28	1.96
1249459--1249732	102	2.7	99	84	5	345	29	25	16	28	1.96
1250199--1250257	30	1.9	31	82	3	75	28	18	6	45	1.75
1254349--1254424	39	1.9	39	94	0	134	32	17	32	17	1.93
1254364--1254424	20	3.1	20	72	13	72	29	14	37	18	1.90
1254355--1254416	19	3.2	19	71	13	63	33	16	33	16	1.91
1259679--1259703	11	2.3	11	100	0	50	84	0	0	16	0.63
1260244--1260333	45	2.0	45	80	6	101	41	7	20	31	1.80
1262360--1262406	25	1.9	24	82	4	58	17	21	19	42	1.89
1262443--1262498	27	2.1	27	83	3	69	17	28	16	37	1.91
1262501--1262553	24	2.2	24	83	6	63	18	18	26	35	1.95
1269513--1269629	25	4.8	24	75	7	83	18	29	18	32	1.95
1269538--1269703	25	6.6	25	73	9	124	18	28	18	34	1.95
1290835--1290937	49	2.1	50	87	5	147	32	16	7	43	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1293084--1293200	25	4.7	25	84	4	146	29	23	22	25	1.99

Tables:   1   2   3   4   5

The End!