genome.fa.s19.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold337
Parameters: 2 7 7 80 10 50 1000
Length:  2178121

Tables:   1   2   3   4   5   6   7   

This is table  2  of  7  ( 806 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
342461--342655	20	9.8	20	69	8	83	15	30	16	36	1.91
347956--348031	23	3.3	23	86	0	116	21	22	26	30	1.99
354490--354524	18	1.9	18	100	0	70	40	11	11	37	1.77
359192--359249	6	9.3	6	90	7	80	20	1	18	58	1.48
367576--367636	31	2.0	31	87	6	88	42	13	9	34	1.77
368190--368237	18	2.6	18	76	6	51	64	25	2	8	1.32
369524--369593	34	2.1	34	94	0	122	44	24	21	10	1.82
381133--381163	16	1.9	16	93	0	53	51	6	19	22	1.69
382307--382496	67	2.8	69	85	3	253	44	25	7	22	1.80
383034--383092	30	2.0	29	83	3	73	44	0	35	20	1.52
383357--383387	9	3.4	9	90	0	53	38	22	12	25	1.90
394544--394591	18	2.7	17	81	9	60	43	0	14	41	1.45
394907--394987	25	3.2	25	74	6	67	37	13	16	33	1.87
398319--398354	17	2.1	18	89	5	56	36	13	8	41	1.75
398947--399127	87	2.1	88	97	1	346	12	24	3	59	1.49
402400--402498	39	2.5	38	83	8	126	48	28	2	21	1.61
402571--402647	9	8.4	9	81	8	84	23	9	25	41	1.84
402806--402830	12	2.1	12	100	0	50	16	24	36	24	1.94
404875--405050	24	7.3	24	74	6	142	31	38	11	18	1.86
404875--405050	48	3.7	48	81	3	194	31	38	11	18	1.86
404875--405035	72	2.2	72	82	2	189	30	38	11	19	1.87
406372--406457	39	2.2	39	93	4	147	16	26	1	55	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
406434--406517	39	2.2	39	97	0	159	32	27	4	35	1.78
408655--408728	36	2.1	36	100	0	148	52	13	10	22	1.71
409108--409153	18	2.6	18	78	0	65	23	13	8	54	1.66
409315--409347	15	2.2	15	89	10	50	39	27	6	27	1.80
410706--410751	15	3.1	15	80	17	51	69	0	28	2	1.00
413179--413244	24	2.8	23	81	4	78	51	19	6	22	1.69
415408--415449	20	2.0	21	86	4	59	35	19	0	45	1.50
424428--424460	10	3.4	10	91	8	59	60	0	0	39	0.97
426024--426138	25	4.6	24	76	7	79	32	21	26	20	1.98
426040--426189	25	5.9	24	73	8	86	32	22	26	18	1.97
429310--429352	20	2.2	20	91	4	70	60	20	4	13	1.51
429320--429358	19	2.1	18	85	4	51	61	17	2	17	1.46
430716--430753	20	1.9	19	85	15	51	18	2	0	78	0.86
435447--435487	21	2.0	21	85	0	55	7	29	12	51	1.66
435457--435498	21	2.0	21	85	0	57	4	28	16	50	1.66
436335--436364	13	2.2	14	94	5	53	30	10	6	53	1.60
444219--444260	20	2.1	20	95	0	75	42	11	0	45	1.41
449802--449881	26	3.1	25	67	16	65	36	28	11	23	1.89
449803--449988	101	1.8	99	84	5	239	33	26	15	24	1.95
452612--452680	25	2.8	25	81	0	93	31	18	28	20	1.96
452612--452692	25	3.2	25	79	6	92	30	17	29	22	1.96
461649--461692	21	2.1	21	100	0	88	38	11	18	31	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
464877--464928	24	2.1	25	82	10	63	30	3	15	50	1.62
464877--464928	25	2.1	24	82	3	59	30	3	15	50	1.62
464660--465174	154	3.3	153	87	7	641	31	16	22	30	1.96
464789--465262	154	3.1	151	88	6	650	30	15	22	31	1.95
466873--466903	11	2.8	11	100	0	62	29	29	19	22	1.98
466895--467035	43	3.3	43	80	5	155	32	29	16	21	1.95
470758--470804	24	2.0	24	83	8	60	17	34	0	48	1.47
472328--472366	16	2.4	16	95	0	69	38	17	10	33	1.84
472444--472708	53	5.0	53	100	0	530	35	15	15	33	1.88
472914--473014	49	2.1	49	84	3	132	31	26	14	26	1.95
473817--473957	33	3.6	39	76	18	141	31	26	19	22	1.98
473863--473990	33	3.6	33	72	19	114	34	26	19	19	1.96
473783--473991	75	2.8	75	90	3	305	31	26	20	21	1.98
474043--474181	50	2.8	50	82	3	172	30	28	17	22	1.97
476079--476129	26	2.0	26	96	0	93	23	25	7	43	1.81
477723--477779	29	2.0	29	96	0	105	47	15	10	26	1.78
478386--478438	26	2.0	26	100	0	106	26	18	7	47	1.75
479085--479119	15	2.3	15	100	0	70	11	28	22	37	1.89
479674--479792	41	2.9	41	84	2	157	29	30	18	21	1.97
480323--480430	56	1.9	58	82	3	139	47	8	16	27	1.75
480307--480444	56	2.4	54	77	10	132	50	7	15	26	1.71
481852--481877	11	2.4	11	100	0	52	61	0	0	38	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
481874--481902	8	3.6	8	100	0	58	75	0	0	24	0.80
485478--485520	22	2.0	22	85	0	59	55	9	13	20	1.66
488418--488474	10	5.5	10	71	8	51	66	1	1	29	1.12
488402--488441	9	4.6	9	84	6	55	62	2	0	35	1.09
488403--488453	9	5.4	9	76	15	50	66	1	0	31	1.03
489959--490011	23	2.3	24	75	24	60	45	0	13	41	1.43
491757--491791	8	4.1	8	89	10	52	71	0	5	22	1.07
500636--500675	14	2.9	14	84	0	53	42	15	7	35	1.75
500601--500667	34	1.9	35	84	3	91	46	10	8	34	1.70
504535--504585	24	2.1	24	92	0	84	35	3	15	45	1.65
506712--506799	45	2.0	45	97	0	167	34	18	10	37	1.84
510491--510576	41	2.1	42	82	2	102	54	24	17	3	1.58
516771--516808	12	3.2	12	85	7	51	73	0	10	15	1.09
524632--524665	3	11.3	3	100	0	68	67	0	0	32	0.91
525689--525740	15	3.2	15	73	19	50	44	0	1	53	1.11
534672--535581	167	5.5	166	92	2	1389	33	23	18	25	1.97
540903--540932	2	15.0	2	92	0	51	46	0	50	3	1.18
541184--541248	29	2.2	29	83	5	76	35	4	12	47	1.62
546072--546176	50	2.1	50	87	3	151	58	4	0	37	1.20
546137--546180	22	2.0	22	82	8	54	63	2	0	34	1.07
546288--546330	21	2.0	21	90	0	68	60	4	0	34	1.17
546506--546559	22	2.4	22	80	17	58	57	0	11	31	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
546616--546656	19	2.2	19	86	0	55	41	9	0	48	1.36
573797--574118	161	2.0	161	100	0	644	32	14	20	32	1.92
574625--574649	12	2.1	12	100	0	50	52	8	16	24	1.70
577496--577545	25	2.0	25	92	0	82	38	2	4	56	1.30
594353--594972	29	21.9	29	90	5	896	45	25	0	29	1.54
594864--594971	26	4.0	26	89	8	171	49	21	0	29	1.50
598169--598448	124	2.3	124	96	1	508	33	21	15	29	1.94
598997--599046	14	3.6	14	76	15	50	52	4	0	44	1.20
602806--602918	24	4.6	24	70	15	79	38	20	24	15	1.92
602830--602924	50	1.9	50	84	2	129	42	17	22	17	1.90
607311--607361	21	2.5	19	78	12	57	1	27	3	66	1.20
608067--608247	90	2.0	91	98	1	355	38	1	9	50	1.43
610567--610592	3	8.7	3	100	0	52	0	0	30	69	0.89
611138--611177	20	2.1	19	85	4	53	20	0	15	65	1.28
612856--612885	6	5.0	6	100	0	60	83	0	0	16	0.65
613662--613699	18	2.0	19	85	10	51	34	0	5	60	1.19
618696--618777	17	4.6	17	73	23	53	59	2	3	34	1.28
618708--618876	9	18.4	9	70	12	78	62	2	4	30	1.29
618825--618876	19	2.7	19	84	0	68	63	3	0	32	1.12
627891--627941	15	3.3	16	67	10	52	27	0	9	62	1.26
632957--633047	45	2.0	44	87	2	128	34	28	5	31	1.80
633026--633063	16	2.4	16	90	0	58	34	34	0	31	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
634161--634449	154	1.9	154	83	4	377	39	11	8	40	1.73
642329--642451	57	2.1	58	87	1	176	28	21	7	43	1.79
647722--647880	78	2.0	79	98	1	311	50	2	5	42	1.37
650469--650530	27	2.4	27	83	5	74	64	1	3	30	1.19
650475--650548	35	2.1	34	90	2	112	63	2	5	28	1.30
651885--652686	400	2.0	401	99	0	1597	40	14	18	26	1.89
656658--656717	29	2.1	28	84	6	77	25	13	13	48	1.78
660197--660319	56	2.2	57	86	4	169	41	7	14	36	1.74
660322--660414	23	4.0	23	88	5	143	35	0	18	46	1.49
660327--660508	23	7.2	23	76	18	121	31	0	25	43	1.55

Tables:   1   2   3   4   5   6   7