genome.fa.s19.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold337
Parameters: 2 7 7 80 10 50 1000
Length:  2178121

Tables:   1   2   3   4   5   6   7   

This is table  7  of  7  ( 806 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1830308--1830349	22	1.9	22	85	9	59	40	7	0	52	1.29
1831568--1831608	21	2.0	21	95	0	73	24	29	14	31	1.95
1831728--1831781	27	2.0	28	92	3	92	22	24	27	25	2.00
1833046--1833152	45	2.4	45	87	1	169	18	21	20	39	1.93
1853560--1853640	39	2.0	40	95	4	146	28	22	32	17	1.96
1855834--1855871	19	2.0	19	85	10	51	10	42	0	47	1.38
1859371--1859417	16	2.9	15	87	9	58	72	2	0	25	0.96
1862332--1862782	217	2.1	219	88	3	658	27	19	18	34	1.95
1862811--1863014	72	2.8	72	87	1	284	28	17	18	35	1.94
1867157--1867226	3	23.0	3	75	13	54	27	4	4	64	1.31
1868731--1868766	18	2.1	16	90	10	54	33	0	2	63	1.08
1875407--1875463	21	2.8	21	86	7	73	36	0	7	56	1.27
1892329--1892492	50	3.4	49	72	19	155	28	21	20	29	1.98
1892373--1892607	123	1.9	123	85	3	330	30	22	18	28	1.97
1894763--1894975	106	2.0	106	87	1	311	30	16	13	39	1.87
1897056--1897090	10	3.6	10	92	3	54	88	0	11	0	0.51
1897056--1897088	16	2.1	16	94	0	57	90	0	9	0	0.44
1898136--1898236	19	5.3	19	89	0	148	35	9	15	38	1.81
1903310--1903508	72	2.8	72	81	3	238	30	20	17	32	1.95
1913339--1913372	2	17.0	2	93	0	59	47	0	0	52	1.00
1916926--1917016	25	3.4	25	68	24	69	50	4	6	38	1.48
1917871--1917933	32	2.0	31	81	6	74	41	4	7	46	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1922054--1922107	27	2.0	27	100	0	108	25	18	37	18	1.94
1922902--1923833	193	4.8	194	92	1	1462	35	15	19	29	1.93
1925112--1925158	2	24.0	2	95	4	87	51	0	48	0	1.00
1936063--1936103	6	6.8	6	100	0	82	0	51	0	48	1.00
1942769--1942834	28	2.4	28	80	10	82	42	1	4	51	1.31
1947980--1948017	16	2.2	18	86	9	53	31	15	2	50	1.58
1949030--1949106	39	2.0	39	100	0	154	64	2	3	28	1.24
1952920--1952968	25	2.0	25	88	4	73	36	6	0	57	1.24
1952949--1952977	14	2.1	14	93	6	51	34	0	0	65	0.93
1953495--1953574	40	2.0	41	82	4	101	45	1	7	46	1.39
1954769--1954820	24	2.2	24	82	0	59	50	5	3	40	1.45
1957413--1957490	29	2.6	30	75	17	81	28	10	5	56	1.54
1994872--1994896	7	3.6	7	100	0	50	88	0	12	0	0.53
1996085--1996347	130	2.0	131	99	0	519	41	9	7	41	1.65
1998033--1998075	19	2.4	18	81	11	52	44	9	0	46	1.35
1998832--1998893	29	2.2	29	85	8	83	43	11	1	43	1.50
2009234--2009376	43	3.3	43	66	19	125	49	5	3	41	1.43
2009198--2009371	86	2.0	87	98	1	341	48	4	3	43	1.40
2009787--2009825	16	2.4	16	87	8	53	41	17	5	35	1.72
2010998--2011056	29	2.0	29	86	3	82	40	13	8	37	1.75
2014232--2014273	16	2.6	16	80	0	57	35	0	16	47	1.47
2026559--2026688	65	2.0	65	80	0	143	30	29	20	20	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2033923--2033982	20	2.7	22	72	15	61	45	3	11	40	1.57
2046111--2046147	19	1.9	19	94	0	65	27	10	24	37	1.88
2048965--2049070	44	2.5	41	75	18	117	35	30	3	30	1.75
2049052--2049088	16	2.3	16	95	0	65	21	32	5	40	1.76
2069233--2069306	23	3.2	23	67	7	69	64	1	9	24	1.31
2069218--2069311	46	2.0	46	97	0	179	58	2	9	29	1.42
2070741--2070816	25	2.6	31	73	25	85	50	5	7	36	1.54
2071621--2071687	27	2.5	27	82	4	91	25	7	20	46	1.77
2071621--2071687	9	7.4	9	83	6	82	25	7	20	46	1.77
2077263--2077295	16	2.1	16	88	5	50	51	9	15	24	1.72
2077714--2077756	19	2.3	19	95	0	77	34	23	16	25	1.95
2095242--2095276	16	2.2	16	100	0	70	28	5	11	54	1.59
2097253--2097305	23	2.3	23	84	12	65	43	7	7	41	1.61
2097253--2097306	22	2.3	23	78	15	58	42	7	7	42	1.61
2108034--2108130	35	2.8	35	79	3	115	24	6	16	52	1.66
2109520--2109583	21	2.7	24	86	11	80	31	6	1	60	1.30
2109526--2109583	25	2.6	21	86	10	71	31	6	1	60	1.33
2111500--2111547	24	2.0	25	83	4	62	68	6	6	18	1.32
2113107--2113152	11	3.8	12	78	16	51	60	0	2	36	1.09
2113700--2113744	21	2.2	20	84	7	56	33	24	15	26	1.95
2124289--2124364	21	3.5	21	77	15	66	50	1	7	40	1.40
2124484--2124522	20	2.0	20	84	0	51	51	2	10	35	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2126665--2126699	2	17.5	2	93	0	61	48	0	2	48	1.16
2128503--2128571	30	2.3	31	82	7	79	46	24	7	21	1.77
2128503--2128571	31	2.3	30	82	7	77	46	24	7	21	1.77
2129304--2129349	3	16.0	3	82	8	60	2	34	0	63	1.07
2131715--2131748	7	4.9	7	100	0	68	85	0	14	0	0.60
2137644--2137684	21	1.9	21	85	5	55	29	0	4	65	1.13
2137654--2137699	21	2.2	21	88	7	67	23	0	0	76	0.79
2139043--2139085	21	2.0	21	81	0	50	72	2	9	16	1.21
2140385--2140847	240	1.9	242	88	3	700	37	14	12	35	1.84
2142948--2143007	31	2.0	29	87	6	84	36	0	10	53	1.35
2142948--2143028	29	2.7	30	84	7	94	37	0	9	53	1.35
2144748--2144785	15	2.4	17	82	13	53	34	0	0	65	0.93
2146379--2146471	25	3.7	24	69	9	60	26	6	3	63	1.34
2147617--2147709	3	29.7	3	83	6	114	61	1	4	33	1.23
2150621--2150663	19	2.3	19	95	0	77	34	23	16	25	1.95
2164747--2164786	19	2.1	19	100	0	80	37	25	5	32	1.77
2173868--2174058	94	2.0	95	98	1	375	53	4	2	40	1.32
2174150--2174192	19	2.3	19	91	0	68	34	20	18	25	1.96
2174853--2174946	30	3.1	30	87	1	125	26	22	6	44	1.76
2174863--2174940	15	5.2	15	68	11	61	26	19	7	46	1.77

Tables:   1   2   3   4   5   6   7

The End!