genome.fa.s19.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold337
Parameters: 2 7 7 80 10 50 1000
Length:  2178121

Tables:   1   2   3   4   5   6   7   

This is table  4  of  7  ( 806 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
984913--985393	240	2.0	239	92	2	804	27	20	17	34	1.95
985449--985847	97	4.2	96	85	3	464	40	18	3	38	1.66
988860--990680	89	20.6	89	80	4	1918	29	24	22	23	1.99
988860--991289	178	13.8	178	79	7	2427	29	24	22	23	1.99
989233--991287	787	2.6	787	95	0	3653	29	24	22	23	1.99
990807--991289	89	5.4	89	87	0	689	28	25	23	22	2.00
988860--990680	44	41.2	44	69	11	757	29	24	22	23	1.99
990207--991418	609	2.0	610	92	0	2039	30	24	22	22	1.99
991343--991831	132	3.7	132	90	0	762	29	18	23	28	1.98
993939--994078	70	2.0	70	87	0	199	30	16	17	35	1.92
996468--996505	20	1.9	20	89	10	60	63	2	5	28	1.30
997685--997821	29	4.7	29	74	16	120	35	24	2	38	1.68
998066--998097	11	2.9	11	90	0	55	71	15	12	0	1.14
998417--998452	15	2.4	15	100	0	72	75	0	19	5	1.00
998409--998480	12	5.8	12	74	16	58	73	0	19	6	1.05
998415--998480	25	2.6	25	86	9	89	75	0	18	6	1.00
998605--998649	23	2.0	23	86	8	65	44	33	20	2	1.63
999276--999577	17	16.5	17	73	17	171	35	10	10	43	1.75
999276--999577	18	16.5	18	73	19	128	35	10	10	43	1.75
999385--999500	20	6.0	20	79	15	84	38	11	12	37	1.78
999333--999577	38	6.6	38	81	6	261	36	11	11	41	1.77
999401--999577	75	2.3	76	87	4	252	38	11	11	38	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
999401--999598	20	10.4	20	71	22	65	38	11	12	37	1.79
1005219--1005251	13	2.5	13	100	0	66	87	12	0	0	0.53
1005218--1005260	17	2.5	16	85	14	59	88	9	2	0	0.60
1005220--1005264	13	3.8	12	88	8	65	86	11	2	0	0.65
1005218--1005264	18	2.6	18	86	6	69	87	10	2	0	0.63
1006133--1007816	81	21.4	79	84	8	1738	28	16	20	34	1.94
1006133--1008148	162	12.8	157	82	9	1902	29	16	20	34	1.94
1007705--1008020	173	1.8	173	90	2	510	31	14	20	33	1.93
1007785--1007961	93	1.9	90	82	10	221	35	12	18	33	1.89
1007878--1008167	77	3.8	77	77	10	281	27	15	22	34	1.94
1008353--1008431	29	2.7	29	86	5	97	31	25	5	37	1.78
1008992--1009065	11	6.4	11	77	13	69	79	1	14	4	0.94
1008994--1009080	15	5.9	14	76	9	77	79	1	14	4	0.95
1008992--1009078	26	3.2	27	77	9	88	79	1	14	4	0.95
1008995--1009072	41	1.9	40	82	12	97	78	1	16	3	0.97
1009208--1009253	23	2.0	23	86	4	65	45	32	19	2	1.62
1009874--1010079	36	5.6	35	75	16	134	36	8	11	43	1.70
1009870--1009969	52	1.9	52	89	4	157	33	7	10	50	1.63
1009961--1010044	21	4.2	20	74	18	66	42	9	10	36	1.72
1009999--1010044	23	2.0	22	87	4	65	47	8	10	32	1.69
1009944--1010059	40	2.9	39	83	9	139	39	8	11	40	1.72
1009870--1010079	17	11.6	17	71	18	122	36	8	10	44	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1010061--1010100	21	2.0	20	85	5	53	42	10	15	32	1.79
1018193--1018237	18	2.6	18	86	10	58	42	6	15	35	1.73
1019066--1019284	67	3.3	66	85	5	264	22	21	16	39	1.92
1019898--1019942	22	2.0	23	95	4	83	60	8	8	22	1.55
1022801--1022856	29	2.0	28	82	10	69	48	0	1	50	1.11
1025837--1026133	82	3.6	82	77	1	274	38	24	18	18	1.93
1025876--1026141	123	2.2	123	82	4	313	38	24	18	18	1.93
1025838--1026150	41	7.6	41	74	2	227	37	25	19	18	1.94
1034755--1034794	21	1.9	21	84	0	53	47	2	17	32	1.61
1037093--1037123	5	6.0	5	92	7	53	77	0	0	22	0.77
1037759--1037834	38	2.0	38	94	0	134	35	19	22	22	1.96
1038121--1038950	409	2.0	410	96	0	1518	20	19	19	40	1.92
1049063--1049104	5	8.2	5	94	5	75	0	0	40	59	0.97
1049065--1049113	15	3.2	16	91	5	75	0	0	36	63	0.95
1049723--1049750	3	9.3	3	100	0	56	64	0	0	35	0.94
1054766--1054796	15	2.1	15	100	0	62	25	38	0	35	1.56
1055445--1055506	31	2.1	29	84	6	79	50	8	8	33	1.61
1058695--1058785	15	5.9	15	74	14	78	41	0	1	57	1.06
1060542--1061160	309	2.0	310	99	0	1231	34	17	7	40	1.78
1068428--1068762	44	7.5	44	79	6	244	36	17	15	29	1.91
1068144--1068584	233	1.9	233	80	4	523	33	17	19	29	1.94
1068557--1068865	44	6.6	50	74	15	227	36	17	15	29	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1068601--1068784	95	1.9	95	82	6	230	37	17	15	29	1.91
1068702--1068909	44	4.6	44	73	12	143	36	18	15	29	1.91
1068735--1068920	95	2.0	95	80	6	216	36	17	16	29	1.92
1068557--1068952	139	2.8	138	81	6	460	35	18	16	29	1.93
1071863--1071895	3	11.0	3	100	0	66	33	0	0	66	0.92
1080720--1080760	14	3.2	13	83	12	50	58	2	0	39	1.11
1091080--1091126	17	2.9	15	79	20	51	0	17	8	74	1.05
1092156--1092194	20	2.0	20	89	0	60	17	17	20	43	1.88
1098128--1098179	16	3.2	16	94	0	86	34	36	0	28	1.58
1102674--1102714	6	6.8	6	88	0	55	39	0	9	51	1.35
1104225--1104255	12	2.6	12	94	0	53	6	22	41	29	1.78
1113344--1113373	12	2.5	12	94	0	51	6	30	40	23	1.80
1122175--1122239	27	2.4	27	97	0	121	30	21	36	10	1.88
1122374--1122417	3	15.3	3	86	9	65	65	0	34	0	0.93
1122374--1122418	17	2.6	17	89	0	72	66	0	33	0	0.92
1122373--1122421	14	3.6	14	91	8	75	65	0	34	0	0.93
1122593--1123002	49	8.5	48	75	12	267	31	1	13	53	1.47
1122728--1122954	27	9.1	25	76	17	224	32	1	12	53	1.49
1122788--1122832	22	2.2	20	84	8	54	26	4	13	55	1.57
1122778--1122835	22	2.9	19	73	14	53	31	3	13	51	1.58
1122728--1122954	98	2.3	98	93	0	400	32	1	12	53	1.49
1122876--1122933	22	2.9	19	71	14	53	34	1	12	51	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1122593--1122835	19	12.4	19	68	21	137	30	1	12	55	1.45
1122995--1123116	60	2.0	60	85	3	165	30	0	14	54	1.47
1123230--1123271	16	2.7	15	85	7	57	38	2	2	57	1.25
1125919--1125963	22	2.1	21	87	4	63	2	31	2	64	1.18
1126048--1126104	27	2.1	27	93	0	96	19	38	26	15	1.92
1132851--1132921	25	2.8	25	80	0	79	33	16	25	23	1.96
1136897--1136982	44	2.0	44	90	0	136	23	23	24	29	1.99
1137817--1137968	75	2.0	75	97	0	286	36	3	9	50	1.53
1138351--1138381	5	6.2	5	100	0	62	41	19	19	19	1.90
1139198--1139234	9	4.1	9	92	0	65	29	10	13	45	1.77
1143913--1143946	17	2.0	17	100	0	68	41	0	0	58	0.98
1146770--1146798	12	2.4	12	100	0	58	44	10	27	17	1.81
1146840--1146864	4	6.2	4	100	0	50	24	0	0	76	0.80
1150728--1150785	26	2.2	26	84	0	71	44	18	12	24	1.84
1157036--1157067	16	2.0	16	100	0	64	43	6	12	37	1.68
1157949--1158025	14	5.0	15	71	20	52	42	15	9	32	1.78
1157965--1158004	20	2.0	20	90	0	62	50	12	10	27	1.72
1157953--1158019	34	1.9	35	90	3	109	46	13	8	31	1.74
1157988--1158027	14	2.9	14	84	0	53	42	17	7	32	1.77
1167965--1167990	6	4.3	6	100	0	52	84	0	0	15	0.62
1176508--1176545	2	19.0	2	100	0	76	50	0	0	50	1.00
1180175--1180199	12	2.1	12	100	0	50	52	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1183564--1183591	13	2.2	13	100	0	56	21	7	35	35	1.81
1195226--1195277	22	2.3	23	87	9	72	76	7	11	3	1.12
1195328--1195390	3	21.3	3	84	9	85	28	1	0	69	0.97
1195330--1195403	6	12.0	6	84	11	60	25	2	0	71	0.99
1201135--1201166	3	10.7	3	100	0	64	31	0	0	68	0.90
1201200--1201231	3	10.7	3	100	0	64	31	0	0	68	0.90
1201112--1201242	65	2.0	66	98	1	255	32	9	5	53	1.55
1201950--1202282	44	7.6	44	89	0	434	30	21	20	27	1.98
1204993--1205096	51	2.0	51	96	0	190	28	33	2	34	1.72
1207029--1207085	23	2.4	25	75	19	59	36	10	3	49	1.55

Tables:   1   2   3   4   5   6   7