genome.fa.s371.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold160
Parameters: 2 7 7 80 10 50 1000
Length:  1852349

Tables:   1   2   3   4   5   6   

This is table  2  of  6  ( 718 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
256234--256269	18	1.9	19	88	5	56	72	8	5	13	1.27
263402--263577	85	2.0	85	97	2	334	34	5	9	51	1.57
264973--265007	16	2.1	17	89	5	54	54	0	0	45	0.99
264972--265043	22	3.3	21	72	16	67	52	1	1	44	1.18
265037--265063	12	2.2	12	100	0	54	48	0	7	44	1.31
265073--265160	45	2.0	46	86	8	128	53	0	11	35	1.37
270777--271143	124	2.9	125	92	1	603	28	16	23	31	1.97
274177--274882	22	32.3	22	75	12	534	25	0	26	46	1.58
274238--274882	68	9.5	67	78	12	425	25	0	26	47	1.57
274605--274653	7	7.0	7	84	6	55	20	0	36	42	1.52
274642--274882	23	10.8	22	80	8	238	24	0	25	48	1.56
274216--274882	45	15.2	44	74	12	468	25	0	26	46	1.57
275350--275391	18	2.3	18	83	0	57	47	7	28	16	1.73
276222--276260	20	2.0	20	85	10	53	53	7	2	35	1.43
277035--277111	11	6.9	11	72	19	54	40	1	33	24	1.64
277058--277110	22	2.3	23	87	6	81	39	1	33	24	1.66
281144--281169	13	2.0	13	100	0	52	61	0	30	7	1.24
282995--283037	20	2.2	20	100	0	86	58	11	9	20	1.61
284490--284565	39	1.9	39	97	0	143	26	10	2	60	1.43
288115--288188	27	2.8	26	78	8	78	43	10	16	29	1.82
288129--288188	26	2.3	25	82	5	66	45	10	16	28	1.80
300625--300755	35	3.8	34	89	6	183	29	26	17	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
300625--300755	69	1.9	70	90	1	210	29	26	17	25	1.97
300581--300765	34	5.4	34	84	2	226	30	24	16	28	1.97
301491--301716	43	5.3	43	87	3	294	24	27	18	29	1.98
301491--301716	86	2.6	86	89	1	328	24	27	18	29	1.98
302066--302114	21	2.3	21	85	0	62	6	38	20	34	1.77
307587--308454	25	34.5	25	97	1	1610	39	0	15	44	1.49
307587--308570	50	19.7	50	95	3	1700	39	0	16	44	1.51
307654--308570	75	12.4	75	96	2	1631	38	0	16	44	1.51
308438--308570	25	5.3	25	89	3	196	33	1	18	47	1.58
309150--309201	16	3.1	16	86	10	77	40	1	17	40	1.60
309152--309199	9	5.6	9	80	9	64	35	2	18	43	1.62
309211--309304	35	2.7	35	86	4	129	57	4	3	35	1.34
312790--313747	114	8.3	114	84	5	1104	25	25	22	26	2.00
313129--313154	13	2.0	13	100	0	52	7	7	23	61	1.49
318160--318203	21	2.0	21	83	12	54	43	9	11	36	1.72
319008--319170	80	2.0	81	97	2	310	31	8	22	37	1.84
329541--329588	20	2.4	20	82	6	62	79	6	10	4	1.05
330785--330821	17	2.2	17	90	0	56	75	2	2	18	1.04
330781--330841	30	2.0	30	84	6	79	72	4	3	19	1.18
330797--330843	17	2.8	17	83	0	58	72	6	2	19	1.17
333358--333419	27	2.3	27	81	10	74	54	0	0	45	0.99
333615--333940	162	2.0	163	98	1	636	32	8	10	48	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
334012--334078	29	2.3	30	80	14	70	50	8	7	32	1.62
345686--346613	88	10.5	88	86	1	1216	28	24	18	28	1.98
345782--346441	44	15.0	44	64	7	255	27	25	18	28	1.98
347769--347805	12	3.2	12	88	11	51	0	2	10	86	0.67
347759--347817	18	3.3	18	85	7	75	1	6	8	83	0.89
347758--347822	29	2.2	31	86	10	91	1	6	10	81	0.93
347779--347817	17	2.3	17	86	0	51	2	5	7	84	0.84
356334--356374	3	13.7	3	89	0	64	34	36	0	29	1.58
360077--360101	12	2.1	12	100	0	50	76	16	8	0	1.02
362658--362698	20	2.0	20	85	0	55	4	26	9	58	1.50
389651--389705	24	2.3	24	87	0	74	27	25	18	29	1.98
389929--389977	18	2.6	19	80	6	55	30	36	12	20	1.89
389943--390005	17	3.5	18	78	6	65	30	33	15	20	1.94
390852--390892	18	2.3	18	87	4	57	29	9	7	53	1.60
397109--397218	27	3.9	28	78	12	118	56	4	17	21	1.59
403726--403756	15	2.1	15	93	0	53	38	29	12	19	1.89
405385--405455	35	2.0	36	97	2	135	45	14	7	33	1.71
406802--406841	13	2.9	14	85	7	55	85	0	12	2	0.71
406802--406841	20	2.1	19	85	4	53	85	0	12	2	0.71
406853--406906	28	1.9	28	92	0	90	40	5	25	27	1.78
410378--410410	15	2.1	17	88	11	52	42	21	6	30	1.77
410842--410968	41	3.0	41	78	4	130	18	17	24	39	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
411848--411904	7	7.9	7	75	7	51	19	1	45	33	1.61
411845--411911	15	4.5	15	77	7	75	20	1	43	34	1.61
411830--411899	29	2.4	29	85	2	97	22	1	41	34	1.63
411855--411913	22	2.6	22	83	2	64	22	1	42	33	1.63
411845--411912	29	2.3	29	87	2	91	22	1	42	33	1.62
412439--413007	270	2.1	268	85	2	764	35	12	18	33	1.89
416331--416401	21	3.4	21	82	0	88	33	14	45	7	1.71
416749--416970	43	5.2	42	83	5	286	32	19	27	21	1.97
416749--416970	85	2.6	84	85	4	293	32	19	27	21	1.97
416905--417041	71	1.9	71	91	2	222	33	21	23	21	1.97
417329--417461	28	4.9	27	83	3	142	21	13	5	60	1.53
417329--417461	54	2.4	54	83	6	162	21	13	5	60	1.53
423976--424242	143	1.9	143	82	6	346	23	12	11	52	1.72
424313--424358	22	2.1	22	87	0	65	71	2	0	26	0.97
425277--425327	23	2.3	23	86	3	68	31	19	7	41	1.80
425975--426019	24	1.9	24	86	13	67	42	0	0	57	0.98
425990--426085	42	2.3	41	89	7	142	38	0	5	56	1.22
428287--428339	20	2.6	21	82	8	65	47	0	32	20	1.51
436249--436293	24	1.9	24	86	13	67	42	0	0	57	0.98
436264--436359	42	2.3	41	89	7	142	38	0	5	56	1.22
438537--438589	20	2.6	21	82	8	65	47	0	32	20	1.51
445893--445972	39	2.1	39	100	0	160	27	17	22	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
449628--449660	17	1.9	17	88	11	50	69	0	30	0	0.88
449634--449676	15	2.7	15	85	7	50	62	0	34	2	1.08
463084--463196	37	3.1	37	76	13	99	40	2	4	52	1.36
463101--463298	62	3.0	68	72	18	200	40	4	5	50	1.43
463959--464022	32	2.1	31	88	5	94	0	23	7	68	1.15
469299--469393	47	2.0	47	95	0	172	30	11	28	29	1.92
472315--472361	24	1.9	25	82	4	60	40	0	6	53	1.27
476552--476793	120	2.0	121	99	0	477	36	4	6	52	1.49
476890--476921	11	2.9	11	95	0	55	25	12	28	34	1.92
477876--477933	22	2.5	23	86	8	82	24	29	15	31	1.95
484002--484605	27	22.4	27	79	8	412	19	17	21	42	1.90
484005--484605	54	11.1	54	83	3	633	19	17	20	41	1.90
484007--484605	81	7.4	81	82	4	624	19	17	21	41	1.90
485816--485851	18	2.0	18	94	0	63	27	41	11	19	1.85
493490--493693	90	2.3	89	82	5	239	38	16	18	26	1.92
495852--495931	26	3.0	26	76	7	72	18	21	25	35	1.96
499747--499999	27	9.4	27	87	1	339	18	17	20	43	1.88
499747--499999	80	3.2	78	86	6	346	18	17	20	43	1.88
499747--499999	107	2.4	107	87	2	366	18	17	20	43	1.88
501835--501877	19	2.3	19	95	0	77	30	13	16	39	1.87
502080--502112	14	2.4	14	90	10	50	54	0	9	36	1.32
503389--503414	3	8.7	3	100	0	52	30	0	34	34	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
503863--503920	29	2.0	29	96	0	107	13	15	13	56	1.67
506601--506667	29	2.3	29	75	7	66	19	0	17	62	1.33
510050--510135	41	2.0	42	86	13	120	24	2	11	61	1.41
510892--511035	49	2.9	49	100	0	288	27	6	18	47	1.74
513102--513193	8	11.5	8	91	0	148	38	25	11	25	1.90
513760--513798	18	2.0	20	85	9	55	28	5	25	41	1.77
522760--522822	30	2.1	30	90	0	99	19	0	42	38	1.51
525548--525622	35	2.1	35	95	0	132	32	12	12	44	1.78
527788--527821	12	2.9	12	91	4	52	32	2	0	64	1.08
528022--528087	32	2.1	32	94	0	114	27	4	12	56	1.55

Tables:   1   2   3   4   5   6