genome.fa.s371.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold160
Parameters: 2 7 7 80 10 50 1000
Length:  1852349

Tables:   1   2   3   4   5   6   

This is table  3  of  6  ( 718 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
529516--529558	6	6.8	6	81	5	50	13	2	2	81	0.89
530393--530430	20	2.0	20	89	5	60	10	31	28	28	1.90
537813--537916	48	2.2	48	98	0	199	43	11	22	23	1.85
545458--545496	15	2.6	16	84	15	57	48	0	0	51	1.00
545892--545930	19	2.1	19	85	9	53	10	41	23	25	1.86
555926--555965	21	1.9	21	100	0	80	55	7	20	17	1.66
556487--556834	116	2.9	119	87	4	517	26	10	27	34	1.90
562895--562954	29	2.1	29	83	0	75	16	23	25	35	1.95
566053--566079	6	4.5	6	100	0	54	33	48	18	0	1.49
566071--566122	24	2.2	24	89	0	77	25	44	21	9	1.82
569511--569540	5	5.8	5	96	4	51	0	16	0	83	0.65
569494--569542	21	2.3	21	85	3	62	4	16	2	77	1.01
570497--570571	31	2.4	31	80	10	82	45	22	8	24	1.79
570493--570826	175	1.9	174	85	1	454	35	19	16	29	1.93
571402--571545	74	1.9	74	95	0	261	43	9	27	18	1.81
571756--571834	31	2.5	31	91	0	131	27	6	25	40	1.80
572319--572349	7	4.4	7	100	0	62	29	0	0	70	0.87
572810--572869	24	2.5	25	73	13	63	8	28	1	61	1.34
576910--576943	12	2.8	12	86	0	50	64	11	0	23	1.26
578094--578132	19	2.1	19	85	9	53	7	12	5	74	1.20
578771--579488	131	5.5	131	90	0	1071	26	24	19	28	1.99
578839--579482	44	14.7	44	67	9	246	26	25	19	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
579607--579647	16	2.7	15	85	7	64	31	2	21	43	1.66
586786--586833	1	48.0	1	78	0	51	0	8	2	89	0.56
586785--586833	10	4.9	10	85	9	64	0	10	2	87	0.62
586788--586832	19	2.4	19	92	0	72	0	8	2	88	0.58
589132--589335	107	1.9	107	92	0	345	31	19	20	28	1.97
589570--589609	12	3.3	12	78	0	53	62	15	2	20	1.43
596589--596622	17	2.0	17	100	0	68	35	23	5	35	1.79
597816--597892	30	2.6	29	77	6	73	33	14	3	48	1.62
604665--604713	15	3.3	15	100	0	98	24	26	20	28	1.99
609169--609312	67	2.1	67	91	2	227	38	4	16	40	1.68
609692--609957	67	4.0	67	92	0	424	38	5	15	40	1.70
609768--609883	37	3.3	35	65	24	84	38	4	14	42	1.66
609169--611151	633	3.1	629	86	4	2630	35	9	15	39	1.80
610326--610583	67	3.9	67	85	5	319	39	3	15	42	1.64
610954--611128	68	2.5	69	85	6	217	38	1	12	48	1.48
617832--617856	13	1.9	13	100	0	50	12	24	8	56	1.62
618691--618875	44	4.2	44	68	10	144	28	18	23	29	1.98
618635--618876	132	1.8	132	93	0	421	29	18	23	28	1.98
622428--622518	14	6.4	14	70	8	58	37	0	3	59	1.14
623032--623092	32	2.0	31	87	6	88	34	9	18	37	1.83
625566--625600	17	2.1	17	88	0	52	34	5	20	40	1.76
627493--627602	57	2.0	55	81	3	130	47	3	20	29	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
648810--648834	12	2.1	12	100	0	50	48	0	0	52	1.00
648867--648970	12	8.9	12	69	20	53	52	2	2	41	1.31
648869--648920	20	2.8	18	78	21	63	51	1	1	44	1.23
648869--648969	37	2.7	38	78	17	106	52	2	2	41	1.32
650479--650507	15	1.9	15	100	0	58	68	6	10	13	1.37
651035--651101	9	7.3	9	75	20	52	67	1	1	29	1.09
651032--651101	10	7.6	9	76	16	63	67	1	1	30	1.08
651198--651267	23	3.3	21	75	16	65	65	4	2	27	1.25
655945--656001	27	2.2	26	90	6	89	36	3	3	56	1.34
663190--663343	68	2.3	67	81	10	163	38	11	7	42	1.68
663490--663616	47	2.7	45	76	12	130	44	2	9	44	1.49
663568--663764	96	2.1	97	85	1	263	46	8	8	36	1.64
663942--664003	30	2.2	30	85	8	85	56	8	6	29	1.53
672148--672211	26	2.5	26	89	0	92	40	7	18	32	1.80
683791--683863	36	2.0	36	94	0	128	36	12	16	34	1.86
687013--687039	13	2.1	13	100	0	54	51	11	29	7	1.64
694584--694911	27	12.2	27	87	2	430	30	20	25	23	1.98
694956--695014	24	2.5	24	83	5	75	23	8	22	45	1.79
695078--695142	27	2.5	26	77	22	73	24	24	20	30	1.98
695163--695330	32	5.3	32	80	6	180	19	20	22	38	1.94
695322--695386	22	3.0	20	76	13	58	16	18	18	46	1.85
695380--695432	26	2.0	26	85	0	70	18	26	20	33	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
701514--701602	42	2.1	41	80	8	99	29	21	25	23	1.99
727772--727865	49	1.9	48	86	2	134	45	8	15	29	1.76
729911--730001	40	2.3	40	80	0	92	30	18	9	40	1.83
730619--730651	16	2.1	16	94	0	57	30	36	9	24	1.86
737445--737487	19	2.3	19	84	8	52	53	6	0	39	1.28
737675--737760	21	4.2	21	72	13	63	62	2	4	30	1.28
738322--738349	2	14.0	2	100	0	56	50	0	0	50	1.00
739808--739845	17	2.2	17	95	4	67	76	2	5	15	1.08
743512--743548	14	2.6	15	83	12	51	32	5	5	56	1.45
746345--746563	105	2.1	105	83	2	280	24	31	21	22	1.98
748918--749400	165	2.9	165	95	0	867	35	23	6	34	1.81
750582--750619	19	2.0	19	100	0	76	36	36	5	21	1.76
754628--754655	14	2.0	14	100	0	56	35	7	0	57	1.26
755104--755141	19	2.0	19	85	10	51	21	42	0	36	1.53
757254--757297	8	5.2	8	80	20	54	13	0	2	84	0.73
757254--757304	7	7.4	7	80	10	52	15	0	1	82	0.76
757263--757299	15	2.4	16	86	9	58	16	0	2	81	0.81
769455--769876	44	9.6	44	76	7	358	26	15	26	31	1.96
769459--769867	132	3.1	132	86	2	538	26	15	26	30	1.96
769452--769888	220	2.0	219	87	3	628	26	15	27	30	1.96
769457--769884	88	4.9	88	78	6	411	26	15	27	31	1.96
769897--770018	40	2.9	41	78	4	111	31	22	22	22	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
771508--771566	8	7.2	8	85	14	77	13	0	1	84	0.69
771508--771566	7	8.4	7	83	10	68	13	0	1	84	0.69
771508--771568	27	2.3	27	85	5	88	14	0	1	83	0.72
777292--777343	3	17.3	3	95	0	95	0	32	1	65	1.04
782943--782972	15	2.0	15	100	0	60	33	0	0	66	0.92
790157--790230	21	3.6	21	73	14	82	58	9	6	25	1.54
790148--790231	40	2.1	40	97	0	159	55	8	7	28	1.56
790143--790209	19	3.5	18	71	25	57	59	7	5	26	1.48
791105--791149	23	2.0	23	86	4	65	0	15	8	75	1.03
791430--791471	17	2.6	16	78	10	50	16	0	2	80	0.81
791427--791471	13	3.6	13	75	19	51	15	0	4	80	0.87
791432--791471	11	3.8	10	83	9	53	15	0	2	82	0.77
791720--791861	50	2.8	50	76	3	160	21	21	25	32	1.98
791971--792268	131	2.3	131	90	2	467	24	24	21	29	1.99
792057--792241	44	4.2	44	66	12	110	23	22	21	32	1.98
792322--792495	87	2.0	87	85	3	233	25	21	24	28	1.99
794630--794741	6	17.8	6	76	7	53	10	7	8	74	1.23
795506--795571	25	2.6	25	85	9	80	57	6	16	19	1.60
799725--799749	12	2.1	12	100	0	50	60	0	8	32	1.26
800669--800708	9	4.3	9	83	3	53	0	17	2	80	0.83
800664--800707	23	1.9	23	86	9	63	0	18	4	77	0.94
801706--801769	25	2.5	25	87	5	83	20	23	26	29	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
820784--820892	34	3.1	34	70	15	105	42	11	35	10	1.76
823729--824911	540	2.2	540	96	0	2172	38	14	13	33	1.85
825633--825705	29	2.5	29	79	2	74	42	1	6	49	1.38
825962--825989	11	2.5	11	100	0	56	39	0	0	60	0.97
826901--826928	11	2.5	11	100	0	56	39	0	0	60	0.97
825805--827682	939	2.0	939	100	0	3756	38	13	15	32	1.87
828018--828046	10	2.7	11	89	10	51	72	0	6	20	1.07
828397--828423	10	2.7	10	100	0	54	40	14	0	44	1.46
829375--829413	18	2.0	20	90	9	64	23	0	20	56	1.42
830485--830538	29	1.9	29	82	14	69	50	3	5	40	1.44

Tables:   1   2   3   4   5   6