genome.fa.s371.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold160
Parameters: 2 7 7 80 10 50 1000
Length:  1852349

Tables:   1   2   3   4   5   6   

This is table  6  of  6  ( 718 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1558201--1558240	18	2.2	18	86	0	53	17	30	7	45	1.76
1558767--1558809	22	2.0	22	95	4	79	44	32	0	23	1.54
1558760--1558891	28	4.8	28	78	15	148	40	32	0	26	1.62
1559267--1559375	54	2.0	54	92	0	182	36	22	19	21	1.95
1562032--1562729	127	5.5	126	90	1	1031	30	21	17	31	1.96
1562859--1562901	21	2.0	22	86	4	61	51	37	0	11	1.39
1562970--1563068	40	2.5	39	80	4	108	24	25	26	24	2.00
1566751--1566784	17	2.0	17	88	11	52	20	0	8	70	1.13
1570282--1570336	4	13.8	4	100	0	110	25	0	23	50	1.49
1574136--1574285	72	2.1	73	83	8	191	44	9	10	36	1.70
1579574--1579610	15	2.5	15	100	0	74	24	27	21	27	1.99
1579862--1579928	32	2.1	32	100	0	134	17	34	11	35	1.87
1582808--1583042	116	2.0	117	97	0	445	22	15	21	39	1.92
1584701--1584771	37	1.9	37	97	0	133	47	18	7	26	1.74
1584790--1584873	33	2.5	33	80	12	86	55	8	3	32	1.47
1588879--1588986	40	2.7	40	78	1	110	35	21	22	21	1.96
1589039--1589116	41	1.9	41	84	5	104	24	20	26	28	1.99
1591092--1591370	86	3.2	86	86	1	353	33	8	15	42	1.78
1591131--1591448	86	3.7	85	81	5	318	33	10	15	41	1.80
1591388--1591529	40	3.6	40	78	8	121	31	7	14	47	1.70
1591913--1592257	172	2.0	172	100	0	690	32	13	19	34	1.91
1599073--1599121	20	2.5	18	78	18	53	24	6	2	67	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1602568--1602597	11	2.7	11	100	0	60	63	0	20	16	1.31
1611010--1611071	23	2.6	24	85	10	83	22	3	12	61	1.46
1611746--1611939	102	1.9	103	92	1	327	34	7	11	46	1.69
1630085--1630213	10	11.6	10	73	18	60	38	0	4	55	1.26
1630044--1630211	81	2.1	82	97	1	320	42	1	4	51	1.30
1651785--1651827	18	2.3	19	84	11	54	20	0	27	51	1.48
1655545--1655579	18	1.9	17	88	11	52	20	40	0	40	1.52
1663971--1664008	19	2.0	19	85	10	51	21	39	0	39	1.53
1665858--1665885	14	2.0	14	100	0	56	28	35	0	35	1.58
1668348--1668454	54	2.0	54	84	0	142	31	18	24	25	1.98
1680439--1680500	31	2.0	31	83	0	79	48	3	20	27	1.65
1680421--1680500	31	2.9	26	69	16	70	45	2	21	31	1.65
1685481--1685557	31	2.8	26	73	17	73	41	1	24	32	1.63
1686622--1686744	9	12.9	9	68	17	61	32	0	4	62	1.16
1686622--1686684	20	3.2	20	77	4	74	30	0	4	65	1.13
1686699--1686743	20	2.3	19	85	11	56	35	0	2	62	1.08
1694266--1694295	6	5.2	6	96	4	53	0	16	0	83	0.65
1694941--1695065	63	2.0	63	80	3	144	27	17	28	26	1.98
1697362--1697626	76	3.5	75	80	4	228	34	18	21	25	1.96
1704416--1704552	36	3.7	36	71	7	103	32	18	23	25	1.97
1704417--1704584	76	2.2	76	83	2	203	32	18	23	25	1.97
1704453--1704584	40	3.4	39	69	14	112	31	19	24	25	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1704460--1704605	76	1.9	76	83	5	188	34	17	23	23	1.96
1715611--1715773	80	2.0	80	100	0	326	38	20	6	34	1.79
1720695--1720827	41	3.1	42	77	12	123	30	27	17	24	1.97
1720690--1720807	41	2.8	41	81	6	130	31	27	16	23	1.97
1720695--1720851	43	3.7	43	77	10	162	29	28	17	24	1.97
1723463--1723514	22	2.5	20	76	17	52	65	1	3	28	1.21
1723505--1723546	18	2.2	20	80	16	54	47	2	0	50	1.14
1729756--1729796	21	2.0	21	90	0	64	70	9	0	19	1.14
1731018--1731310	147	2.0	146	94	2	516	22	11	4	61	1.47
1731312--1731345	15	2.3	15	90	10	52	32	11	0	55	1.36
1738220--1738255	13	2.8	13	91	0	63	36	38	8	16	1.79
1738626--1738668	23	1.9	22	86	13	61	0	16	4	79	0.90
1739417--1739543	45	2.7	46	80	7	123	40	7	2	48	1.45
1739414--1739543	24	5.7	21	73	19	75	40	7	2	50	1.44
1744243--1744273	9	3.4	9	90	0	53	38	22	12	25	1.90
1747203--1747550	89	3.8	91	71	13	239	30	17	21	31	1.96
1747372--1747514	48	3.0	47	71	11	123	32	18	20	27	1.97
1747206--1747594	180	2.2	175	83	8	462	30	18	21	29	1.97
1747803--1747841	19	1.9	19	90	10	60	69	17	0	12	1.19
1750881--1750940	31	1.9	31	82	0	75	40	18	8	33	1.80
1755927--1755968	11	4.1	10	79	14	50	64	2	2	30	1.19
1756338--1756383	20	2.2	21	85	11	60	32	0	4	63	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1759807--1759926	40	3.0	40	78	12	95	20	29	27	23	1.98
1764521--1764555	17	2.0	18	88	5	54	14	40	28	17	1.88
1766153--1766183	10	3.1	10	95	0	53	35	0	35	29	1.58
1766511--1766611	51	2.0	51	88	0	148	32	17	21	27	1.96
1767419--1767478	31	1.9	31	93	6	104	40	1	0	58	1.08
1767427--1767478	10	4.9	11	77	13	56	42	1	0	55	1.10
1771030--1771091	8	7.8	8	96	0	115	50	0	14	35	1.43
1774849--1774882	17	2.0	17	88	11	52	32	0	0	67	0.91
1780444--1780483	20	2.0	20	95	0	71	52	5	17	25	1.64
1782368--1782397	12	2.5	12	94	0	51	36	10	0	53	1.35
1782393--1782418	4	6.5	4	100	0	52	26	0	0	73	0.84
1787905--1787945	3	13.7	3	84	0	55	34	2	2	60	1.23
1788081--1788130	9	5.7	9	79	11	50	22	6	2	70	1.20
1788080--1788141	18	3.4	18	76	14	56	22	4	3	69	1.22
1789334--1789371	11	3.4	11	88	3	58	55	0	2	42	1.14
1789319--1789499	40	4.5	40	82	8	206	62	0	2	34	1.07
1789358--1789468	29	4.1	28	74	19	119	67	0	0	31	0.97
1789368--1789468	9	10.3	10	69	19	54	69	0	0	29	0.95
1789325--1789500	89	2.0	90	87	7	261	64	0	2	33	1.06
1789346--1789500	79	2.0	80	87	3	224	64	0	1	33	1.05
1789425--1789450	11	2.4	11	100	0	52	61	0	0	38	0.96
1789368--1789490	50	2.5	49	86	6	160	66	0	2	30	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1791045--1791079	3	11.7	3	100	0	70	31	0	0	68	0.90
1796580--1796606	2	13.5	2	100	0	54	51	0	0	48	1.00
1796604--1796647	21	2.0	21	86	4	61	75	2	13	9	1.14
1798396--1798491	3	30.3	3	71	21	63	60	3	4	32	1.31
1798395--1798463	15	4.7	15	77	13	72	60	1	2	34	1.20
1798396--1798464	22	3.1	24	81	10	85	60	1	2	34	1.20
1798441--1798474	14	2.3	15	90	5	52	58	5	8	26	1.51
1798396--1798492	43	2.3	43	83	3	115	60	3	4	31	1.31
1799806--1800316	50	10.2	50	67	5	239	24	24	21	29	1.99
1799772--1800360	100	5.9	100	86	1	736	25	24	21	28	1.99
1799772--1800365	299	2.0	299	86	3	838	25	24	20	28	1.99
1799806--1800421	199	3.1	200	83	3	569	25	25	20	28	1.99
1801311--1801354	23	1.9	23	95	0	79	27	13	6	52	1.66
1801995--1802052	15	3.9	15	75	13	57	15	3	6	74	1.17
1801995--1802034	20	2.0	20	85	5	53	17	2	5	75	1.10
1801995--1802068	14	5.0	15	79	8	71	13	2	6	77	1.08
1802017--1802069	15	3.4	16	75	14	58	9	1	7	81	0.96
1802859--1802918	25	2.4	25	83	8	70	58	5	16	20	1.56
1808933--1808979	22	2.0	24	84	8	62	48	4	19	27	1.67
1811058--1811093	18	2.0	18	94	0	63	30	5	13	50	1.65
1815775--1815808	15	2.2	16	89	5	52	70	11	14	2	1.27
1829710--1829906	98	2.0	98	95	0	358	28	8	24	38	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1832159--1832566	204	2.0	204	93	0	690	31	21	8	39	1.83
1833268--1833317	20	2.3	21	83	10	57	42	20	4	34	1.70
1839617--1839652	3	12.0	3	100	0	72	66	0	0	33	0.92
1839653--1839961	158	2.0	158	100	0	618	42	13	19	24	1.87
1840498--1840551	9	6.4	9	80	16	55	38	1	1	57	1.20
1846611--1846644	2	17.0	2	100	0	68	50	0	0	50	1.00
1847725--1847775	18	2.8	18	74	14	59	39	5	5	49	1.51
1848373--1848412	17	2.4	16	88	12	55	45	5	0	50	1.23

Tables:   1   2   3   4   5   6

The End!