genome.fa.s371.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold160
Parameters: 2 7 7 80 10 50 1000
Length:  1852349

Tables:   1   2   3   4   5   6   

This is table  4  of  6  ( 718 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
832529--832670	75	1.9	75	92	0	239	35	17	21	24	1.95
834373--834417	18	2.5	18	85	7	65	26	44	13	15	1.83
834577--834624	18	2.7	18	80	0	60	37	22	8	31	1.84
836346--836402	6	9.8	6	80	14	50	15	0	33	50	1.44
836482--836522	18	2.3	18	100	0	82	31	4	9	53	1.55
836610--837041	218	2.0	220	83	6	545	41	7	11	39	1.70
840968--841001	2	17.0	2	100	0	68	50	0	0	50	1.00
848434--848501	21	3.2	20	66	25	50	25	13	20	41	1.88
848436--848503	22	3.1	21	66	26	52	25	11	20	42	1.86
848424--848522	43	2.3	43	89	3	155	28	15	16	40	1.88
849059--849206	47	3.2	47	72	16	164	45	2	3	48	1.33
849044--849171	44	2.8	44	72	16	127	46	3	3	46	1.37
849759--849848	45	2.0	44	85	6	119	37	27	4	30	1.76
849836--849878	16	2.7	16	96	0	77	20	32	4	41	1.73
850932--851305	44	8.7	42	75	11	305	24	21	24	29	1.99
850930--851302	85	4.4	84	73	11	335	24	21	24	30	1.99
850892--851306	129	3.2	129	91	2	672	25	21	23	29	1.99
854922--854992	6	11.8	6	98	0	97	67	0	7	25	1.15
855287--855312	12	2.2	12	100	0	52	7	15	30	46	1.74
855381--855553	74	2.4	72	85	9	219	30	27	20	21	1.98
855445--855780	114	2.9	113	82	7	387	25	21	26	26	1.99
855682--855850	73	2.3	73	90	1	268	24	20	27	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
855562--855963	186	2.2	186	85	2	556	25	19	27	27	1.99
855753--856090	113	3.0	114	88	2	529	26	20	26	26	1.99
855753--856097	114	3.0	114	89	2	534	26	20	26	26	1.99
856354--856400	16	2.8	17	87	3	69	21	0	44	34	1.52
856384--856425	22	1.9	22	85	9	59	19	0	40	40	1.51
857451--857492	14	2.9	15	89	6	61	16	0	50	33	1.46
857458--857508	7	7.3	7	80	6	59	17	0	52	29	1.45
857444--857563	7	17.0	7	72	14	50	20	0	40	38	1.53
862235--862297	18	3.5	18	78	4	56	57	14	6	22	1.60
862353--862415	17	3.7	16	81	12	72	42	23	1	31	1.64
862329--862415	34	2.6	34	83	0	111	42	21	4	31	1.73
862354--862426	34	2.1	34	82	0	83	43	24	1	30	1.63
863072--863115	18	2.4	18	76	0	52	47	20	2	29	1.62
863201--863233	17	1.9	17	93	0	57	33	6	27	33	1.81
863303--863336	16	2.1	16	89	10	52	23	17	38	20	1.93
894408--894480	28	2.4	30	77	15	78	30	19	23	27	1.98
894538--894601	26	2.5	26	92	0	101	39	25	18	17	1.92
894538--894618	26	3.1	26	89	0	90	38	22	18	20	1.94
894766--894827	27	2.4	26	79	12	65	19	17	24	38	1.93
894785--894837	27	2.0	27	96	0	97	15	15	24	45	1.84
899841--899902	27	2.3	27	82	0	70	12	17	20	48	1.80
904345--904434	36	2.5	36	80	3	101	28	14	16	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
920172--920228	24	2.4	24	100	0	114	40	7	15	36	1.75
924342--924410	31	2.2	31	85	10	88	37	14	7	40	1.74
925492--925524	11	2.9	12	86	13	52	33	0	0	66	0.92
932188--932237	21	2.4	21	80	6	57	6	18	2	74	1.12
932191--932243	17	3.1	16	78	13	52	7	15	1	75	1.11
935487--935761	27	10.3	27	77	7	195	40	17	14	27	1.89
935512--935761	54	4.7	53	76	6	227	39	17	15	28	1.90
935649--935761	26	4.3	26	78	11	106	40	15	14	29	1.87
939016--939062	24	2.1	21	84	11	58	31	4	40	23	1.74
940554--940579	7	3.7	7	100	0	52	11	0	0	88	0.52
940802--940998	27	7.3	27	79	4	182	44	18	13	24	1.85
940802--941024	81	2.8	80	79	4	223	42	18	13	25	1.87
940802--941051	54	4.6	54	78	4	193	42	18	13	26	1.87
940802--941024	27	8.3	26	77	4	135	42	18	13	25	1.87
943534--943606	10	7.2	10	71	13	51	65	8	1	24	1.28
944311--944354	17	2.6	17	80	20	56	38	4	0	56	1.20
944317--944353	16	2.3	16	90	9	58	37	2	0	59	1.12
944311--944357	18	2.8	17	78	12	60	40	4	0	55	1.19
945022--945073	22	2.3	22	83	9	61	32	1	3	61	1.25
952085--952117	16	2.1	16	100	0	66	6	24	36	33	1.80
955522--955731	46	4.6	45	78	4	181	31	22	18	27	1.97
976622--976693	31	2.3	32	92	2	119	16	20	13	48	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
979865--980030	27	6.2	27	86	0	226	43	20	16	19	1.88
980197--980243	23	2.0	23	88	8	69	21	17	19	42	1.89
980237--980294	26	2.2	26	93	0	98	24	22	15	37	1.93
984367--984479	57	2.0	57	98	0	217	23	3	19	53	1.60
989782--989964	27	6.8	27	82	5	210	21	16	20	40	1.91
989794--989964	80	2.1	81	89	1	254	20	17	19	42	1.89
990282--990312	14	2.2	14	94	0	53	25	45	9	19	1.81
990256--990403	52	2.8	52	96	0	269	28	33	15	22	1.94
991748--991802	25	2.2	25	96	0	101	38	18	14	29	1.90
999664--999806	27	5.3	27	87	0	196	44	23	15	16	1.85
1003186--1003385	27	7.4	28	77	5	189	40	23	17	19	1.91
1003186--1003385	81	2.5	80	81	4	231	40	23	17	19	1.91
1006597--1006646	25	2.0	25	88	3	75	20	26	20	34	1.96
1008680--1008761	27	3.0	27	82	8	96	31	21	25	20	1.98
1008895--1009332	27	16.2	27	82	7	416	27	15	16	39	1.90
1008910--1009332	54	7.9	54	81	7	477	27	15	17	39	1.90
1008921--1009332	81	5.1	79	82	6	459	27	15	16	40	1.89
1015530--1015560	16	1.9	16	100	0	62	58	0	3	38	1.15
1021071--1021105	18	1.9	18	88	0	52	28	17	11	42	1.83
1023520--1023567	20	2.4	20	82	0	60	60	2	20	16	1.46
1027594--1028446	426	2.0	427	99	0	1699	48	13	10	28	1.75
1029983--1030060	25	3.2	24	89	7	113	39	3	0	56	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1029984--1030062	23	3.3	23	84	6	113	39	3	0	56	1.17
1034928--1034952	12	2.1	12	100	0	50	44	0	0	56	0.99
1041780--1041810	16	1.9	16	93	0	53	41	3	25	29	1.71
1041797--1041884	44	2.0	46	84	8	119	32	2	23	40	1.67
1050254--1050583	165	2.0	165	98	0	633	28	30	14	26	1.95
1052153--1052187	12	2.9	12	95	0	61	0	25	2	71	1.00
1053830--1053863	16	2.2	15	89	5	50	55	0	0	44	0.99
1053929--1053987	30	2.0	30	90	3	93	49	10	6	33	1.63
1061274--1061319	16	2.8	17	75	21	53	58	4	4	32	1.37
1062314--1062348	13	2.7	13	90	0	52	11	8	0	80	0.92
1062683--1062712	15	2.0	15	93	0	51	13	3	13	70	1.30
1084697--1084932	50	4.7	50	87	0	301	22	30	21	26	1.99
1093346--1093495	73	2.1	73	94	2	266	30	32	14	24	1.94
1096376--1096406	16	1.9	16	100	0	62	51	3	12	32	1.56
1102071--1102294	121	1.9	121	88	3	344	41	14	15	28	1.87
1102798--1102833	18	2.0	18	100	0	72	50	11	11	27	1.72
1106584--1106776	50	3.8	50	85	3	253	26	22	28	22	1.99
1106584--1106776	100	1.9	101	87	1	280	26	22	28	22	1.99
1108165--1108417	27	9.4	27	80	3	260	43	19	17	20	1.89
1108165--1108416	54	4.7	54	82	8	289	43	19	17	20	1.88
1108819--1108877	29	1.9	31	86	10	86	32	15	11	40	1.83
1111176--1111506	27	12.4	27	82	8	284	42	21	16	19	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1111177--1111506	81	4.1	82	83	6	356	43	21	16	19	1.88
1128488--1128529	21	2.0	21	85	0	57	23	21	38	16	1.93
1143974--1144037	10	6.1	10	75	8	56	79	1	12	6	0.98
1143972--1144018	17	2.7	18	80	9	53	78	0	10	10	0.96
1143974--1144015	12	3.7	11	81	12	50	78	0	11	9	0.96
1148753--1148869	49	2.4	48	80	5	128	25	17	27	29	1.97
1150827--1150853	14	1.9	14	100	0	54	14	25	22	37	1.93
1156936--1156997	30	2.1	30	87	0	88	48	9	8	33	1.65
1166705--1166756	25	2.1	24	86	10	70	63	5	3	26	1.34
1168253--1168333	38	2.2	38	93	2	146	34	19	2	43	1.65

Tables:   1   2   3   4   5   6