genome.fa.s4079.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold84
Parameters: 2 7 7 80 10 50 1000
Length:  4163231

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  2  of  11  ( 1218 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
466902--466949	22	2.2	22	96	0	87	39	6	27	27	1.80
486603--486638	17	2.2	16	90	5	54	38	0	47	13	1.44
494397--494538	50	2.7	52	77	8	153	26	19	28	26	1.98
494402--494637	50	4.6	50	75	5	152	27	18	27	27	1.98
494508--494634	49	2.6	50	80	5	143	29	18	24	27	1.98
495734--495887	42	3.7	41	76	12	161	29	28	18	24	1.98
505191--505381	27	7.1	27	74	2	150	36	17	19	26	1.94
505212--505363	54	2.8	54	82	2	171	38	15	19	27	1.91
505191--505375	81	2.3	81	83	3	248	37	17	18	26	1.93
505436--505492	24	2.4	24	81	0	69	17	12	24	45	1.83
505662--505738	32	2.4	31	79	14	86	22	22	19	36	1.95
511625--511660	16	2.2	17	90	5	56	36	0	52	11	1.37
520048--520086	10	3.9	10	82	0	51	25	30	15	28	1.96
520049--520086	20	1.9	20	88	0	58	26	31	15	26	1.96
527439--527605	50	3.2	50	80	8	158	24	31	19	25	1.98
527828--527885	30	2.0	29	82	3	71	29	25	6	37	1.82
534374--534419	24	1.9	24	86	8	67	15	19	4	60	1.51
537449--537569	51	2.3	54	84	5	149	24	19	34	21	1.96
546843--546890	22	2.1	23	81	11	55	39	27	4	29	1.75
551067--551110	23	1.9	23	86	9	63	36	9	13	40	1.76
558134--558168	11	3.0	12	83	8	54	57	17	5	20	1.60
565392--565437	23	2.0	23	87	8	67	52	8	10	28	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
576914--576968	21	2.6	21	79	0	65	49	16	9	25	1.75
579540--579587	10	4.7	10	80	12	53	64	0	2	33	1.05
587230--587266	18	2.0	19	89	5	58	51	0	43	5	1.24
587811--587859	22	2.3	21	82	6	55	65	4	2	28	1.22
591023--591067	22	2.0	22	87	8	65	28	0	20	51	1.48
610884--610930	19	2.6	18	76	6	51	76	0	14	8	1.01
615992--616080	25	3.6	25	77	7	92	23	22	22	31	1.98
624689--624727	19	2.1	19	90	0	60	28	5	25	41	1.77
641064--641135	36	2.0	36	100	0	144	25	19	25	30	1.98
648807--648848	12	3.4	12	90	3	57	73	2	4	19	1.12
648802--648848	13	3.6	13	91	5	69	74	2	4	19	1.09
648896--648955	26	2.3	26	88	5	86	73	3	11	11	1.21
656748--656787	19	2.1	19	100	0	80	10	20	20	50	1.76
661965--661990	11	2.4	11	100	0	52	46	11	15	26	1.80
672216--672249	12	2.8	12	86	4	50	70	5	2	20	1.21
681333--681362	12	2.5	12	100	0	60	26	40	26	6	1.81
687719--688688	322	3.0	322	97	0	1823	41	13	9	35	1.78
697468--697527	8	7.4	8	75	3	57	31	1	0	66	1.01
697485--697527	17	2.6	16	85	3	59	32	0	0	67	0.91
705665--705713	21	2.5	20	80	9	55	57	0	4	38	1.18
705962--705999	19	2.0	19	85	10	51	21	42	0	36	1.53
710795--710862	34	2.0	34	94	0	118	26	11	26	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
716772--716809	19	2.0	19	85	10	51	21	42	0	36	1.53
741518--741645	68	1.9	68	91	4	215	20	27	7	45	1.77
742650--742688	17	2.4	16	91	4	60	51	0	17	30	1.46
743557--743653	42	2.3	42	89	0	149	35	8	27	28	1.86
769386--769410	12	2.1	12	100	0	50	64	16	8	12	1.49
800998--801044	24	2.0	24	87	8	69	6	8	10	74	1.22
803205--803271	34	1.9	35	90	3	109	46	10	8	34	1.70
803370--803395	2	13.0	2	100	0	52	50	0	50	0	1.00
806026--806081	28	2.0	28	100	0	112	14	10	32	42	1.80
817203--817321	57	2.1	57	83	0	148	15	24	14	46	1.82
818946--818981	18	1.9	19	88	5	56	58	13	5	22	1.56
824991--825076	27	3.2	27	79	0	100	13	26	23	36	1.93
828144--828172	14	2.0	15	93	6	51	13	17	13	55	1.70
833622--833663	20	2.1	20	100	0	84	33	9	28	28	1.88
842338--842426	45	2.0	45	84	0	115	26	17	22	32	1.97
847140--847172	13	2.5	13	100	0	66	0	36	39	24	1.56
865051--865080	14	2.1	14	93	0	51	66	16	6	10	1.41
865215--865246	11	3.1	11	86	13	50	25	37	0	37	1.56
873128--873176	24	2.0	24	100	0	98	59	4	20	16	1.53
873712--874018	156	2.0	156	98	0	596	30	22	16	29	1.96
877665--877871	27	7.7	27	84	1	245	40	22	17	19	1.91
877672--877867	80	2.4	81	83	5	245	41	20	17	19	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
877687--877899	54	4.0	53	80	8	189	40	21	17	19	1.91
878106--878185	26	3.1	26	85	3	117	21	21	17	40	1.92
878287--878508	28	7.9	28	84	2	257	23	20	22	33	1.97
879748--879890	53	2.7	53	90	5	216	43	20	18	17	1.88
879743--879890	27	5.5	27	89	1	217	42	20	19	17	1.89
880260--880432	28	6.2	28	84	3	143	26	19	22	31	1.98
880253--880432	56	3.2	56	82	3	204	26	20	22	31	1.98
880257--880419	84	1.9	84	83	4	213	25	18	23	32	1.97
881292--881338	23	2.0	24	84	12	62	42	2	0	55	1.12
896080--896167	44	2.0	44	95	4	160	32	5	18	43	1.73
905568--905654	43	2.0	44	97	2	167	20	13	19	45	1.84
906543--906580	13	3.0	13	84	3	51	23	31	31	13	1.93
912575--912619	22	2.0	22	87	8	65	26	0	20	53	1.46
926008--926036	11	2.6	11	100	0	58	34	0	10	55	1.34
933165--933231	31	2.1	32	81	8	75	26	4	22	46	1.71
941096--941182	34	2.6	34	92	0	138	17	11	27	43	1.83
947786--947870	34	2.5	34	84	0	107	20	10	25	43	1.83
951418--951452	15	2.4	14	90	4	52	51	0	0	48	1.00
952461--952603	61	2.3	61	82	0	169	24	21	28	25	1.99
964538--964576	19	2.0	20	90	10	62	30	0	12	56	1.37
965573--965614	19	2.3	19	80	12	52	47	2	0	50	1.14
975060--975138	32	2.4	33	81	10	90	27	22	21	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
979105--979218	27	4.2	26	80	8	122	45	19	15	19	1.85
979105--979218	54	2.1	54	85	6	151	45	19	15	19	1.85
979383--979445	26	2.4	26	83	0	72	25	17	17	39	1.91
979560--979631	33	2.2	33	82	0	81	25	23	25	26	2.00
981081--981106	13	2.0	13	100	0	52	53	15	23	7	1.67
992641--992752	42	2.7	42	84	8	140	22	18	26	32	1.97
997364--997478	27	4.3	27	100	0	230	20	33	31	14	1.93
997570--997629	27	2.2	27	85	5	77	45	21	16	16	1.86
1018011--1018105	37	2.6	37	83	3	120	16	9	30	43	1.80
1026248--1026274	9	3.0	9	100	0	54	33	22	11	33	1.89
1036238--1036484	115	2.1	116	87	3	347	23	27	13	35	1.93
1036235--1036461	29	7.8	29	74	7	131	24	26	14	34	1.93
1036326--1036538	86	2.5	86	83	3	250	26	27	11	34	1.91
1036297--1036538	29	8.4	29	79	7	190	26	26	12	34	1.92
1036297--1036538	57	4.2	58	73	8	199	26	26	12	34	1.92
1036265--1036510	115	2.1	116	84	3	318	25	28	12	33	1.92
1036782--1036833	14	3.8	14	73	12	54	48	7	0	44	1.31
1036775--1036835	28	2.2	28	90	0	95	49	11	0	39	1.39
1037817--1037858	21	2.0	21	86	9	59	4	30	0	64	1.14
1048694--1048730	18	2.1	18	100	0	74	45	0	32	21	1.52
1053087--1053123	11	3.4	11	92	0	56	29	43	5	21	1.75
1055410--1055469	29	2.1	29	87	0	84	10	15	40	35	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1057984--1058303	27	11.8	26	82	6	352	42	21	16	20	1.89
1057984--1058292	137	2.3	135	84	5	401	42	20	16	20	1.89
1060487--1060551	25	2.6	25	92	0	94	32	21	18	27	1.97
1060499--1060551	25	2.1	25	96	0	97	33	22	18	24	1.97
1062485--1062625	40	3.5	40	72	4	124	19	21	21	37	1.94
1062519--1062587	20	3.5	20	71	0	66	18	26	21	33	1.97
1062462--1062620	80	2.0	80	82	2	194	18	21	21	38	1.94
1064249--1064280	16	2.0	16	93	0	55	43	0	21	34	1.53
1077161--1077236	20	3.8	20	77	6	75	28	18	27	25	1.98
1081608--1081663	10	5.6	10	78	16	62	25	17	30	26	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11