genome.fa.s710.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold180
Parameters: 2 7 7 80 10 50 1000
Length:  1398530

Tables:   1   2   3   4   5   6   

This is table  2  of  6  ( 610 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
295158--295186	15	2.0	15	93	6	51	51	6	20	20	1.70
300696--300762	33	2.0	33	100	0	134	32	7	20	38	1.81
301193--301275	28	2.9	29	85	3	114	21	12	22	43	1.86
301193--301296	29	3.7	27	81	10	109	19	11	25	44	1.84
301385--301461	28	2.8	28	89	0	118	10	20	25	42	1.84
301391--301516	28	4.5	28	80	1	99	16	16	22	44	1.86
304545--304596	9	5.4	9	80	11	50	71	1	1	25	1.07
304564--304598	3	11.3	3	93	6	61	68	0	0	31	0.90
304567--304596	10	3.1	10	95	4	53	70	0	0	30	0.88
308105--308149	18	2.4	19	81	7	56	42	2	2	53	1.25
308537--308583	13	3.4	14	77	19	53	8	21	0	70	1.14
309864--309900	14	2.6	14	91	0	56	24	5	5	64	1.36
310163--310212	24	2.1	24	81	7	57	46	18	4	32	1.67
312140--312369	95	2.4	96	83	5	295	38	3	19	39	1.67
312402--312941	125	4.3	126	89	1	789	33	18	21	27	1.96
316618--316660	18	2.4	18	88	0	59	44	9	27	18	1.80
321204--321871	126	5.3	126	89	0	940	27	20	17	34	1.95
321904--322107	89	2.2	96	83	6	260	38	19	2	39	1.65
323318--323915	46	12.4	47	69	12	232	31	20	22	25	1.98
323317--323916	47	12.5	48	70	12	212	31	20	22	25	1.98
327032--327067	13	2.8	13	84	16	56	30	5	0	63	1.17
330040--330448	126	3.3	125	88	3	608	28	16	23	31	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
333620--334277	21	30.8	21	83	8	803	25	0	29	45	1.54
333620--334279	43	15.4	43	85	6	832	25	0	29	45	1.54
334067--334186	36	3.1	36	79	15	150	26	0	27	45	1.54
334084--334121	15	2.5	15	91	0	58	28	0	26	44	1.54
334151--334273	22	5.2	26	78	16	94	27	0	28	43	1.55
334228--334274	14	3.4	14	77	16	62	27	0	27	44	1.55
334232--334278	15	3.4	14	77	19	53	23	0	29	46	1.52
334308--334336	8	3.8	8	95	4	51	51	0	0	48	1.00
335693--335730	20	1.9	20	84	10	51	55	7	2	34	1.43
335999--336065	31	2.2	31	83	0	80	37	17	16	28	1.92
336607--336639	7	4.7	7	100	0	66	27	0	15	57	1.38
337582--337630	21	2.3	21	79	6	55	32	34	28	4	1.76
337815--337844	15	1.9	16	93	6	53	46	0	0	53	1.00
337815--337844	8	3.9	8	91	8	53	46	0	0	53	1.00
340242--340636	126	3.3	123	83	7	476	30	23	16	29	1.96
344922--345046	61	2.0	61	98	0	241	20	5	15	58	1.57
345563--345734	52	3.2	52	76	10	143	44	11	12	31	1.77
345673--345745	19	3.9	18	71	7	58	36	10	13	38	1.80
345563--345736	17	9.8	17	72	13	95	44	10	12	31	1.77
345563--345743	18	10.2	17	71	10	80	43	10	12	33	1.77
345666--345750	36	2.3	39	83	6	104	40	9	11	38	1.74
345580--345777	107	1.8	107	80	9	233	45	10	11	33	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
345790--345836	17	2.6	19	80	12	64	44	10	17	27	1.81
346293--346349	5	11.4	5	85	7	71	0	19	0	80	0.71
346294--346337	8	5.2	8	88	5	61	0	15	0	84	0.63
346299--346342	21	2.0	22	95	4	81	0	15	0	84	0.63
346645--346671	8	3.4	8	100	0	54	0	11	0	88	0.50
346645--346717	7	10.3	7	78	12	69	2	15	1	80	0.89
346645--346720	20	4.0	19	73	20	70	2	15	1	80	0.90
346655--346723	20	3.3	20	82	6	75	4	15	1	78	0.98
346825--346862	20	1.9	19	89	5	58	0	28	0	71	0.87
346815--346886	34	2.2	33	85	9	94	0	26	0	73	0.83
346818--346886	27	2.6	26	82	8	77	0	24	0	75	0.81
346820--346899	18	4.4	19	71	21	57	0	27	0	72	0.85
346808--346879	25	2.9	26	81	6	87	0	29	0	70	0.87
346807--346899	46	2.0	49	83	10	122	0	30	0	69	0.88
346804--346906	44	2.2	50	81	16	130	0	31	0	68	0.89
347426--347512	30	2.9	30	78	1	93	41	8	18	32	1.79
347441--347541	30	3.4	30	82	5	107	44	3	16	34	1.67
347534--347568	17	2.1	17	94	0	61	20	0	5	74	1.02
347893--348354	79	6.0	77	84	6	535	35	20	16	27	1.94
347837--348334	149	3.3	149	85	6	515	34	22	16	26	1.95
347890--348353	149	3.0	154	87	5	593	34	20	16	28	1.94
349266--349308	6	6.8	6	84	10	59	0	2	13	83	0.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
360211--360388	17	10.2	17	71	17	100	45	10	11	32	1.75
360211--360334	52	2.4	51	82	8	144	45	10	13	30	1.77
360211--360373	18	9.2	18	70	15	90	44	10	12	31	1.77
360302--360374	38	1.9	38	91	0	119	45	9	10	34	1.72
360211--360401	35	5.4	34	75	11	163	46	10	11	31	1.75
360347--360398	17	2.9	18	83	13	72	48	11	3	36	1.58
360431--360476	17	2.6	19	80	16	62	41	10	15	32	1.82
360942--361000	20	2.7	22	85	12	77	0	18	1	79	0.81
360950--361000	8	6.1	8	79	6	57	0	21	0	78	0.75
360948--361000	24	2.2	24	87	9	74	0	20	0	79	0.74
361330--361356	14	1.9	14	100	0	54	3	14	0	81	0.82
361327--361379	22	2.4	22	81	9	54	3	16	1	77	1.01
361327--361389	25	2.7	23	75	20	58	3	17	1	77	0.97
361472--361551	25	3.1	25	82	7	81	1	31	0	67	0.99
361504--361547	22	2.0	21	86	4	61	0	25	0	75	0.81
361517--361564	25	1.9	25	83	8	62	2	27	0	70	0.98
362137--362230	30	3.2	29	79	11	95	44	4	17	34	1.68
362144--362230	29	3.0	28	79	12	88	44	3	18	33	1.66
362222--362257	18	2.0	18	100	0	72	22	0	5	72	1.05
364482--364542	3	20.3	3	96	0	113	67	1	0	31	1.01
371998--372054	25	2.3	23	80	16	62	31	7	3	57	1.42
373022--373049	14	2.0	14	100	0	56	42	0	0	57	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
377669--377719	20	2.3	23	83	9	63	74	1	1	21	1.02
378513--378558	22	2.1	22	88	8	67	30	0	6	63	1.20
381540--381590	13	3.9	13	81	0	66	35	25	7	31	1.85
382296--382359	29	2.2	30	85	2	85	32	6	17	43	1.74
404349--404445	47	2.1	47	98	0	185	38	28	7	25	1.83
408828--408924	47	2.1	47	98	0	185	38	28	7	25	1.83
409684--409747	13	4.9	13	75	7	67	31	6	28	34	1.82
409692--409748	26	2.1	27	87	3	80	36	5	28	29	1.79
411639--411664	13	2.0	13	100	0	52	61	7	7	23	1.49
411639--411672	12	2.8	12	90	4	50	55	8	8	26	1.59
412168--412206	3	13.0	3	100	0	78	66	0	0	33	0.92
413672--414157	132	3.6	132	88	5	697	28	24	18	28	1.98
414717--414991	50	5.5	50	70	5	205	27	24	18	29	1.98
414699--415039	100	3.4	100	91	0	556	27	24	19	28	1.98
414766--415039	50	5.5	49	68	3	179	27	23	18	29	1.98
423266--423304	3	13.0	3	100	0	78	66	0	0	33	0.92
445463--445887	44	9.5	44	78	7	372	32	20	19	27	1.97
446049--446095	14	3.4	13	80	13	58	78	10	0	10	0.96
449414--449543	40	3.2	40	93	1	197	29	16	33	20	1.95
449494--449975	113	4.3	113	91	2	763	28	18	27	25	1.98
449494--449975	225	2.1	225	90	2	761	28	18	27	25	1.98
451421--451617	84	2.3	84	91	0	304	34	20	17	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
452821--452860	11	3.7	11	96	3	73	37	10	25	27	1.88
464083--464960	42	20.9	42	98	0	1666	22	21	23	33	1.98
465413--465463	17	2.7	19	79	17	61	39	19	15	25	1.91
465765--465838	29	2.5	29	82	4	85	24	13	13	48	1.78
468627--468657	15	2.1	15	93	0	53	25	0	12	61	1.32
478647--478683	18	2.0	19	94	5	67	40	16	21	21	1.91
480570--480939	125	2.9	127	82	7	419	29	17	23	29	1.97
480554--481627	342	3.1	343	92	0	1747	30	19	22	28	1.98
480996--481281	126	2.3	127	88	1	423	30	19	20	29	1.97
480912--481281	126	2.9	128	83	6	401	30	18	22	28	1.98

Tables:   1   2   3   4   5   6