Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold180
Parameters: 2 7 7 80 10 50 1000
Length:  1398530

Tables:   1   2   3   4   5   6   

This is table  6  of  6  ( 610 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1384888--1384927
12
3.5
12
83
13
57
37
0
10
52
1.35
1389541--1389578
17
2.3
17
86
4
51
65
5
5
23
1.34
1394350--1394384
3
11.7
3
100
0
70
0
0
31
68
0.90
1396824--1396889
23
2.7
25
69
9
73
28
24
30
16
1.97
1396882--1396931
26
1.9
26
88
8
75
36
22
20
22
1.96
1396871--1396941
26
2.8
26
75
14
67
33
22
23
19
1.97
1397047--1397108
24
2.6
24
75
14
65
35
19
29
16
1.93
1397407--1397470
32
2.0
32
100
0
128
40
12
6
40
1.68
1397459--1397490
10
3.0
11
90
9
57
37
18
0
43
1.51
1398488--1398525
19
2.1
19
95
5
69
57
0
0
42
0.98

Tables:   1   2   3   4   5   6

The End!