genome.fa.s782.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold45
Parameters: 2 7 7 80 10 50 1000
Length:  1930935

Tables:   1   2   3   4   5   6   7   

This is table  2  of  7  ( 749 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
235401--235671	137	2.0	137	91	5	440	26	15	14	44	1.84
236611--236779	73	2.4	71	90	2	257	26	27	18	27	1.98
236743--237636	115	7.8	106	72	17	539	27	27	18	26	1.98
236834--237696	115	7.4	114	73	14	634	26	27	19	26	1.99
237011--237182	73	2.4	71	90	1	263	25	26	19	27	1.99
236869--237420	185	3.0	182	85	4	739	28	28	18	24	1.98
237169--237314	70	2.1	70	94	0	256	36	30	15	17	1.91
237239--237636	217	1.8	218	92	0	681	27	28	19	25	1.99
237765--237790	12	2.2	12	100	0	52	46	30	15	7	1.74
238425--238461	2	19.0	2	88	5	58	51	2	0	45	1.15
238965--238992	9	3.1	9	100	0	56	46	10	10	32	1.73
245029--245053	6	4.2	6	100	0	50	84	0	0	16	0.63
247869--247923	26	2.1	26	96	0	101	78	12	9	0	0.97
247851--247925	37	2.0	37	86	0	105	76	12	10	1	1.10
250323--250366	3	14.7	3	100	0	88	31	0	0	68	0.90
254371--254405	18	1.9	18	94	0	61	5	28	40	25	1.78
262623--262665	3	14.7	3	90	4	70	65	2	32	0	1.06
262665--262693	6	4.8	6	100	0	58	68	0	17	13	1.20
264286--264324	21	1.9	21	89	5	62	38	7	0	53	1.30
265817--265869	12	4.0	12	73	21	52	30	0	1	67	1.01
265790--265920	19	6.6	19	73	12	88	34	0	3	61	1.20
265820--265909	29	3.1	28	81	12	85	33	0	3	63	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
265791--265920	10	13.2	9	73	17	91	33	0	3	61	1.19
269472--269628	54	3.1	54	63	29	146	45	10	10	33	1.73
269435--269628	96	2.0	97	98	1	381	44	11	9	34	1.72
283683--284275	296	2.0	297	99	0	1170	31	26	15	27	1.96
287972--288009	18	2.2	18	85	4	51	10	18	10	60	1.57
288354--288384	15	2.0	16	93	6	55	12	0	16	70	1.16
288976--289014	17	2.3	17	86	8	53	5	12	7	74	1.20
288969--289014	18	2.6	17	79	6	56	6	13	6	73	1.22
301451--301500	6	7.7	7	93	6	72	74	14	0	12	1.09
301452--301533	31	2.6	31	86	1	101	71	12	6	9	1.29
303483--303887	44	8.8	44	70	16	246	33	19	20	26	1.97
303516--303848	98	3.5	98	77	11	393	33	18	20	26	1.96
303485--303887	186	2.2	186	93	0	680	33	19	20	26	1.97
303657--303962	142	2.2	142	93	0	513	34	18	20	26	1.96
304293--304322	15	1.9	16	93	6	53	73	16	0	10	1.09
304552--304581	15	2.0	15	100	0	60	13	40	26	20	1.89
304668--304705	18	2.2	18	85	4	51	60	10	18	10	1.57
315709--315943	129	1.8	129	82	3	303	35	11	16	36	1.84
318040--318080	18	2.2	18	86	8	55	56	7	4	31	1.48
320046--320731	44	15.3	45	75	5	193	26	25	18	29	1.98
320015--320796	89	8.7	89	93	2	1190	26	25	18	29	1.98
325299--325349	26	2.0	26	96	0	93	29	29	15	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
325766--325841	40	1.9	40	97	0	143	28	23	19	27	1.98
335794--335833	20	2.0	20	85	5	53	62	5	7	25	1.42
336473--336502	5	6.0	5	92	0	51	60	3	0	36	1.14
343370--343439	28	2.5	28	95	0	122	37	15	22	24	1.93
348786--349857	129	8.3	129	90	0	1588	25	19	22	32	1.97
350467--350645	93	1.9	96	84	4	247	48	7	16	27	1.74
351395--351450	7	8.0	7	84	11	71	1	1	10	85	0.74
351404--351451	20	2.3	20	85	3	60	2	2	8	87	0.70
351398--351451	24	2.3	22	84	12	72	1	1	9	87	0.71
354184--354230	19	2.5	20	86	6	62	42	8	21	27	1.81
357960--358010	15	3.5	15	71	15	52	19	13	15	50	1.77
358605--358681	29	2.6	29	79	4	82	49	15	12	22	1.78
358798--358874	29	2.6	29	79	4	82	49	15	12	22	1.78
358504--358889	193	2.0	193	98	1	756	39	15	16	29	1.89
360564--360643	34	2.4	32	78	13	83	5	22	1	71	1.13
363334--363367	11	2.9	12	91	8	61	58	8	8	23	1.56
363915--363978	13	4.7	13	73	9	56	0	21	0	78	0.76
363915--364002	21	4.0	23	75	10	71	0	26	0	73	0.83
363906--363978	28	2.6	27	84	4	83	2	19	0	78	0.88
364097--364152	9	6.2	9	77	8	51	0	26	1	71	0.96
364099--364140	16	2.4	18	81	18	54	0	30	0	69	0.89
364104--364154	27	1.9	26	84	11	68	0	29	1	68	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
364096--364149	25	2.3	22	82	17	65	0	25	1	72	0.95
364100--364160	25	2.4	23	78	21	61	1	27	1	68	1.08
364286--364312	12	2.2	12	100	0	54	7	7	14	70	1.32
364548--364680	30	4.4	30	85	0	158	42	1	18	37	1.60
364545--364680	60	2.3	60	86	0	191	41	2	19	37	1.64
364861--366165	153	8.5	152	83	4	1513	34	20	17	27	1.95
364861--366165	76	17.1	76	85	3	1597	34	20	17	27	1.95
367646--367778	50	2.7	50	83	0	149	21	28	22	27	1.99
374159--374209	22	2.3	22	89	0	75	29	19	9	41	1.84
376013--376059	20	2.3	20	77	0	58	19	21	6	53	1.67
376183--376425	50	4.8	49	78	10	170	23	26	21	28	1.99
386016--386063	24	2.0	25	84	12	64	70	4	0	25	1.04
386228--386290	15	4.2	15	74	6	56	4	22	39	33	1.75
386624--386675	25	2.1	25	89	7	79	1	17	0	80	0.80
386683--386723	18	2.4	17	91	4	64	0	29	0	70	0.87
386790--386858	31	2.4	29	79	16	72	0	37	0	62	0.96
386816--386867	19	2.7	19	76	8	52	0	30	0	69	0.89
386843--386883	20	2.0	21	86	13	59	2	24	0	73	0.96
386810--386877	23	2.8	24	75	16	70	0	30	0	69	0.89
387212--387314	30	3.5	29	78	6	100	39	2	20	36	1.68
387238--387321	30	2.8	30	88	1	123	44	2	17	35	1.62
390130--390323	103	1.9	101	84	4	255	27	25	17	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
397849--398031	91	2.0	92	98	1	359	30	9	8	51	1.65
401006--401143	49	2.8	49	82	4	152	24	15	30	29	1.95
410137--410176	21	1.9	21	89	0	62	30	7	2	60	1.38
410131--410182	21	2.4	21	78	15	61	32	5	1	59	1.32
409953--410527	287	2.0	288	99	0	1143	38	8	6	45	1.61
410424--410463	21	1.9	21	89	0	62	30	7	2	60	1.38
410418--410469	21	2.4	21	78	15	61	32	5	1	59	1.32
411126--411357	89	2.6	90	88	4	342	57	12	4	25	1.54
412575--412605	9	3.4	9	90	0	53	25	12	22	38	1.90
413816--413850	3	11.7	3	100	0	70	68	0	0	31	0.90
423583--423699	41	2.8	42	80	10	141	29	28	17	25	1.97
423776--423821	16	3.1	15	78	18	51	54	4	0	41	1.20
423808--423853	24	2.0	23	83	12	58	41	0	4	54	1.20
423799--423853	20	2.5	21	80	14	58	40	0	3	56	1.17
432961--433034	7	10.1	7	69	13	51	44	35	0	20	1.52
432963--433009	15	3.1	15	84	3	67	48	31	0	19	1.49
433042--433141	22	4.7	21	71	9	67	46	29	2	23	1.63
433477--433761	41	7.0	41	79	7	285	31	27	19	22	1.97
433459--433757	163	1.8	162	85	6	417	33	25	18	22	1.97
433477--433761	82	3.5	81	79	6	317	31	27	19	22	1.97
440174--440201	14	2.0	14	100	0	56	35	14	14	35	1.86
450061--450125	26	2.6	25	79	18	64	13	3	7	75	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
450050--450125	6	12.2	6	76	13	64	15	2	6	75	1.13
451800--452268	234	2.0	235	99	0	931	34	20	19	26	1.96
453023--453053	14	2.2	14	94	0	53	38	0	12	48	1.42
472047--472097	27	1.9	26	84	4	66	23	7	1	66	1.28
478192--478267	36	2.1	36	87	0	107	27	22	22	27	1.99
478228--478762	169	3.2	169	93	1	867	28	17	25	27	1.98
478680--478893	51	4.3	51	71	9	154	29	17	26	25	1.98
478640--478909	147	1.8	147	91	0	441	29	18	26	26	1.98
478902--479027	44	2.9	44	86	2	155	29	17	23	29	1.97
479074--479237	57	2.9	56	81	5	188	34	20	19	25	1.96

Tables:   1   2   3   4   5   6   7