Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold45
Parameters: 2 7 7 80 10 50 1000
Length:  1930935

Tables:   1   2   3   4   5   6   7   

This is table  7  of  7  ( 749 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1887441--1887817
44
8.6
43
76
9
139
27
24
18
28
1.98
1887591--1887920
44
7.5
44
84
4
326
28
24
18
28
1.98
1889847--1890020
57
3.1
57
100
0
348
35
18
10
35
1.86
1894445--1894563
64
1.9
63
92
1
202
48
21
5
23
1.72
1894542--1894583
20
2.1
20
86
0
57
57
21
0
21
1.41
1894542--1894570
10
2.9
10
100
0
58
58
20
0
20
1.39
1894670--1894737
34
2.0
34
91
5
111
52
11
5
29
1.61
1897861--1897942
24
3.4
24
77
6
94
42
1
36
19
1.59
1901084--1901140
30
1.9
30
85
7
80
29
15
29
24
1.96
1904183--1904220
3
12.7
3
100
0
76
31
0
0
68
0.90
1907948--1908013
25
2.6
25
88
9
89
24
13
4
57
1.55
1908645--1908680
14
2.6
14
100
0
72
30
5
33
30
1.81
1908767--1908828
11
5.5
11
77
11
63
75
3
4
16
1.10
1908767--1908828
6
9.8
6
75
16
54
75
3
4
16
1.10
1910154--1910299
44
3.3
44
91
3
215
28
16
27
27
1.97
1910524--1910704
50
3.6
50
75
10
174
32
17
24
25
1.96
1910529--1910740
100
2.1
99
83
6
259
34
16
21
27
1.95
1910751--1911281
84
6.3
84
71
10
293
31
21
20
25
1.98
1910751--1911281
44
12.6
41
73
11
299
31
21
20
25
1.98
1910737--1911344
125
4.8
125
86
3
810
32
21
20
26
1.98
1912699--1912744
3
15.3
3
100
0
92
32
0
0
67
0.91
1919153--1919184
15
2.1
15
94
0
55
15
6
9
68
1.36
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1921722--1921787
6
10.7
6
76
16
55
16
0
7
75
1.02
1921722--1921787
13
5.3
12
75
15
55
16
0
7
75
1.02
1921740--1921790
19
2.7
19
84
6
59
13
0
9
76
1.02
1924930--1924958
6
4.8
6
100
0
58
65
17
0
17
1.27
1924998--1925082
9
9.4
9
81
10
102
25
12
23
37
1.91
1925006--1925082
18
4.3
18
94
0
118
25
12
23
37
1.91
1927893--1927933
17
2.6
16
82
14
50
75
0
9
14
1.04

Tables:   1   2   3   4   5   6   7

The End!