genome.fa.s782.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold45
Parameters: 2 7 7 80 10 50 1000
Length:  1930935

Tables:   1   2   3   4   5   6   7   

This is table  4  of  7  ( 749 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
860538--860577	8	5.2	8	82	11	57	12	0	25	62	1.30
862594--862802	92	2.3	91	86	5	278	45	3	3	46	1.39
862730--862777	26	1.9	25	84	16	64	45	0	2	52	1.12
862952--862993	15	2.7	16	82	14	52	45	0	2	52	1.13
862943--862984	15	2.9	15	82	10	52	47	0	0	52	1.00
863123--863176	16	3.4	16	92	0	90	27	35	1	35	1.68
865637--865724	25	3.6	24	73	13	63	32	17	25	25	1.96
873201--873262	24	2.6	24	82	5	72	33	25	17	22	1.96
874084--874204	63	1.9	63	89	0	188	39	21	3	35	1.70
882922--883007	40	2.2	40	89	0	127	12	26	20	39	1.89
885924--885953	15	2.0	15	93	0	51	26	36	0	36	1.57
887913--888008	3	32.3	3	82	2	122	62	2	5	30	1.28
890654--890693	14	2.9	15	82	14	50	35	5	12	47	1.63
892173--892215	8	5.1	8	78	10	50	20	0	0	79	0.74
892801--892922	54	2.2	55	95	2	219	29	9	6	54	1.59
892894--892929	19	1.9	19	94	5	65	27	5	5	61	1.41
892940--893002	20	2.7	22	79	18	58	28	3	6	61	1.36
904449--904529	42	1.9	42	90	5	128	30	14	30	23	1.95
905595--906117	45	11.5	45	84	3	629	30	16	21	30	1.96
905591--906108	90	5.7	90	87	3	725	30	16	22	30	1.95
905591--906093	135	3.7	135	86	4	704	30	16	22	31	1.95
906105--906215	44	2.5	44	86	2	152	36	20	18	25	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
906105--906265	44	3.7	42	75	6	133	34	19	20	25	1.96
911408--911551	45	3.2	46	83	7	170	34	12	23	29	1.92
911553--911663	44	2.5	44	86	2	152	36	20	18	25	1.95
911553--911713	44	3.7	42	75	6	133	34	19	20	25	1.96
913198--913238	3	13.7	3	89	0	64	34	4	0	60	1.18
913252--913287	19	1.9	19	94	5	65	27	5	5	61	1.41
913298--913360	20	2.7	22	79	18	58	28	3	6	61	1.36
916090--916276	51	3.7	50	87	3	259	26	22	29	20	1.99
916090--916276	101	1.9	101	87	4	279	26	22	29	20	1.99
952322--952375	23	2.3	23	87	0	72	37	27	16	18	1.93
959115--959203	27	3.3	27	85	3	81	24	20	13	41	1.88
959135--959253	54	2.2	54	86	5	161	25	22	13	38	1.91
959135--959253	27	4.4	27	84	4	141	25	22	13	38	1.91
960709--960762	25	2.2	25	89	0	81	16	46	12	24	1.82
960713--960768	25	2.4	22	75	16	58	16	46	12	25	1.81
966221--966366	72	2.0	72	89	0	220	32	26	14	26	1.94
970014--970388	187	2.0	188	99	0	743	41	18	13	26	1.88
976826--976869	11	4.1	11	79	5	54	9	22	2	65	1.32
979155--979207	17	3.0	17	76	10	61	30	7	20	41	1.80
985510--985567	29	2.0	29	100	0	116	34	27	20	17	1.95
986338--986459	50	2.4	50	79	2	118	28	18	22	31	1.97
990029--990062	16	2.1	16	94	0	59	8	11	5	73	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
993378--993498	27	4.5	27	85	0	161	33	15	23	26	1.95
993519--993640	24	5.1	24	84	0	163	26	6	21	45	1.76
993720--993780	27	2.3	27	86	11	81	13	24	26	36	1.92
993814--993955	32	4.4	32	80	0	149	23	21	17	37	1.94
993797--993955	64	2.5	64	83	0	201	22	20	17	38	1.93
995076--995452	40	9.4	40	81	3	420	23	28	16	31	1.96
995076--995463	120	3.2	118	83	3	465	23	28	15	32	1.95
996514--996804	27	10.9	27	79	4	149	23	14	18	43	1.87
996528--996804	54	5.2	54	85	3	362	23	14	17	44	1.85
996541--996804	107	2.5	107	86	2	361	23	13	17	44	1.85
997720--997761	17	2.3	18	88	8	59	76	0	21	2	0.90
999096--999184	42	2.1	42	84	10	112	26	26	26	19	1.99
999816--999852	17	2.1	17	90	5	56	13	8	0	78	0.96
1006819--1006863	22	2.0	22	86	0	63	37	4	0	57	1.19
1009488--1009622	48	2.8	48	85	2	173	28	20	28	22	1.98
1009488--1009677	48	3.9	48	79	2	157	30	19	26	23	1.98
1010752--1010954	43	4.7	43	85	0	262	25	27	17	30	1.97
1011351--1011396	21	2.2	21	92	0	74	4	36	19	39	1.72
1019125--1019180	16	3.5	16	82	0	76	39	5	25	30	1.78
1019162--1019254	45	2.1	43	88	9	134	33	6	23	36	1.81
1019410--1019451	19	2.1	21	83	16	63	57	0	0	42	0.99
1019363--1019496	56	2.4	56	81	11	139	50	5	0	44	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1020810--1020917	54	2.0	54	96	0	198	41	18	18	21	1.90
1027418--1027557	64	2.2	64	96	0	253	32	17	18	30	1.95
1032122--1032223	50	2.0	50	92	0	168	36	19	11	32	1.88
1041229--1041375	20	7.2	20	64	17	61	15	29	18	36	1.92
1041216--1041375	41	3.9	41	80	5	182	16	28	18	36	1.93
1048558--1048803	41	6.0	41	79	2	219	21	28	14	34	1.93
1052307--1052372	33	2.0	33	100	0	132	33	12	24	30	1.91
1052475--1052514	15	2.7	15	96	0	71	25	20	27	27	1.99
1055651--1055679	12	2.3	13	94	5	51	65	6	6	20	1.40
1060443--1060641	99	2.0	99	93	0	335	29	14	17	38	1.89
1074877--1074939	20	3.2	19	71	20	58	49	0	1	49	1.10
1082520--1082552	17	1.9	17	93	0	57	27	0	9	63	1.24
1083005--1083040	15	2.5	15	86	4	56	33	0	5	61	1.19
1087851--1087893	21	2.0	22	95	4	79	55	4	4	34	1.41
1087905--1087975	3	23.3	3	78	8	72	60	1	4	33	1.25
1089725--1090166	45	9.8	45	85	1	598	32	19	16	31	1.94
1112273--1112433	44	3.6	44	77	9	141	34	12	24	29	1.92
1112492--1112645	44	3.6	42	76	10	134	29	18	20	31	1.97
1112493--1112740	89	2.8	85	75	10	210	31	16	19	32	1.94
1112356--1112781	181	2.4	181	83	5	524	30	17	21	30	1.96
1114423--1114626	24	8.5	24	68	14	82	33	5	4	55	1.44
1114865--1114900	15	2.5	15	86	4	56	33	0	5	61	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1118510--1118538	12	2.4	12	100	0	58	68	0	24	6	1.13
1120849--1121051	101	2.0	101	93	0	343	46	12	17	23	1.82
1129137--1129170	16	2.1	16	94	0	59	32	35	2	29	1.73
1139930--1139986	17	3.5	17	77	15	57	47	5	3	43	1.43
1140823--1140854	16	2.0	16	93	0	55	34	0	0	65	0.93
1141144--1141178	17	2.1	17	100	0	70	48	17	5	28	1.69
1145922--1146089	51	3.3	51	92	1	275	27	25	15	31	1.96
1149572--1149761	47	4.0	47	77	9	181	32	26	14	26	1.95
1151049--1151156	51	2.1	51	89	3	164	29	27	15	26	1.96
1151115--1151193	37	2.1	37	92	0	131	34	21	15	29	1.94
1151081--1151244	88	1.9	88	93	0	283	32	23	14	29	1.94
1151152--1151251	51	2.0	51	93	0	173	31	22	14	33	1.93
1158087--1158149	15	3.9	17	75	19	55	17	7	1	73	1.16
1168136--1168166	12	2.6	12	100	0	62	45	0	25	29	1.54
1169306--1169361	21	2.6	22	88	2	78	21	14	25	39	1.91
1175176--1175210	18	2.0	17	88	5	52	45	0	0	54	0.99
1175375--1175464	43	2.0	45	82	4	112	37	28	6	26	1.82
1175445--1175497	16	3.2	16	94	5	97	37	37	0	24	1.56
1190937--1191000	33	1.9	33	87	0	92	15	18	18	46	1.84
1191180--1191251	35	2.1	35	97	0	135	20	22	13	43	1.87
1193301--1193337	19	1.9	19	89	10	58	29	0	0	70	0.88
1193303--1193354	14	3.9	13	78	16	54	26	3	0	69	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1193306--1193339	15	2.4	14	90	9	52	26	0	0	73	0.83
1193302--1193355	26	2.0	27	86	10	76	25	3	0	70	1.04
1194772--1194820	24	2.0	24	100	0	98	20	12	24	42	1.86
1211507--1211677	27	6.3	27	87	6	231	40	22	18	18	1.91
1211507--1211677	55	3.1	54	87	6	247	40	22	18	18	1.91
1214553--1214634	3	28.7	3	71	18	50	25	2	1	70	1.06
1214553--1214619	14	4.8	13	77	14	62	22	1	1	74	0.98
1214557--1214611	20	2.9	19	79	12	69	23	1	0	74	0.91
1223104--1223200	49	2.0	50	84	10	128	34	25	13	26	1.93
1224033--1224209	75	2.4	75	85	9	261	32	26	18	22	1.97

Tables:   1   2   3   4   5   6   7