genome.fa.s782.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: scaffold45
Parameters: 2 7 7 80 10 50 1000
Length:  1930935

Tables:   1   2   3   4   5   6   7   

This is table  3  of  7  ( 749 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
479450--479644	44	4.4	45	73	8	141	27	21	24	26	1.99
479731--479802	24	3.0	24	91	0	117	16	19	30	33	1.94
481067--481145	25	3.2	23	76	20	63	30	2	2	64	1.20
481137--481176	21	2.0	21	85	5	55	30	5	2	62	1.29
482327--482376	24	2.1	24	88	0	73	36	4	8	52	1.50
485231--485267	17	2.2	17	90	0	56	37	27	0	35	1.57
488573--488619	20	2.3	21	81	3	60	51	23	2	23	1.59
512747--513423	342	2.0	342	93	0	1165	33	19	20	27	1.96
516662--516692	2	15.5	2	100	0	62	51	0	48	0	1.00
517881--517909	2	14.5	2	100	0	58	51	0	0	48	1.00
519192--519224	15	2.4	14	90	10	50	21	12	0	66	1.23
519967--520113	41	3.5	41	73	7	134	35	23	17	24	1.95
523906--523964	24	2.4	25	85	2	75	28	5	6	59	1.45
524039--524076	10	3.7	10	89	3	58	57	0	7	34	1.28
524034--524074	20	2.0	21	90	4	66	58	0	4	36	1.20
526348--526726	49	7.6	49	82	10	459	49	1	7	42	1.40
526349--526726	100	3.8	97	84	9	455	48	1	7	42	1.40
526346--526726	149	2.6	149	96	3	691	49	1	7	42	1.39
528360--528385	12	2.2	12	100	0	52	38	0	19	42	1.51
528361--528604	129	1.9	129	89	1	382	27	13	20	39	1.89
531083--531572	163	3.0	163	90	2	777	24	16	19	39	1.91
536033--536139	25	4.3	25	81	0	124	35	17	14	31	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
536033--536176	25	5.8	24	78	6	92	36	18	15	30	1.91
536517--536778	129	2.0	129	91	1	418	27	14	19	38	1.90
552815--553043	40	5.8	40	83	2	291	35	17	33	13	1.89
552863--552967	20	5.2	20	69	13	72	34	17	36	12	1.87
552815--553043	79	2.9	79	84	1	289	35	17	33	13	1.89
552883--553027	20	7.3	20	66	13	84	36	17	33	12	1.88
552973--553036	20	3.2	20	69	8	58	35	18	31	14	1.91
558652--558811	40	4.0	40	80	2	153	17	29	17	35	1.93
558756--558860	20	5.2	20	72	2	77	16	33	17	33	1.92
575959--576001	4	11.0	4	95	5	79	25	0	0	74	0.82
576757--576787	16	1.9	16	93	0	53	16	32	12	38	1.86
580819--580900	25	3.3	25	70	16	71	26	21	20	30	1.98
583805--584131	48	6.8	47	80	10	349	31	21	24	22	1.98
583805--584131	100	3.4	97	81	10	377	31	21	24	22	1.98
587391--587448	21	2.7	22	81	5	73	29	6	1	62	1.31
587464--587534	37	1.9	37	82	2	90	26	4	1	67	1.17
587909--587979	5	13.2	5	74	14	52	19	21	0	59	1.38
587896--587948	21	2.5	21	78	0	52	18	13	3	64	1.43
587911--587952	16	2.6	16	88	0	57	21	14	0	64	1.29
587909--587952	21	2.1	21	86	0	61	20	15	0	63	1.31
587986--588028	21	2.1	21	87	8	63	23	11	0	65	1.25
591174--591326	48	3.1	48	78	7	175	37	22	17	22	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
597779--597813	18	1.9	18	88	11	54	34	0	25	40	1.56
600607--600642	18	2.0	18	100	0	72	38	11	22	27	1.88
601073--601560	243	2.0	243	98	0	940	31	6	23	38	1.81
603695--603746	4	12.8	4	80	15	54	23	1	0	75	0.91
603695--603748	10	5.3	10	75	20	58	22	1	0	75	0.89
603696--603745	7	7.3	7	78	17	52	24	2	0	74	0.93
614073--614261	46	4.1	46	99	0	369	37	21	2	39	1.65
621180--621491	153	2.0	154	90	3	486	37	14	14	33	1.87
624197--624231	17	2.1	17	94	0	61	37	20	5	37	1.76
627534--627684	42	3.6	41	84	7	187	20	19	27	33	1.96
633449--633682	50	4.7	48	79	10	222	25	17	26	31	1.97
633499--633681	99	1.8	100	89	1	287	24	16	27	32	1.96
633845--633876	16	2.0	16	93	0	55	59	0	15	25	1.36
645535--645563	15	1.9	15	100	0	58	10	20	6	62	1.50
653604--653642	17	2.2	18	95	4	71	23	15	0	61	1.33
656462--656559	42	2.3	40	76	10	97	20	32	21	25	1.97
657070--657094	12	2.1	12	100	0	50	48	0	24	28	1.52
660690--660789	40	2.5	40	69	18	91	32	22	31	15	1.94
660790--660855	20	3.3	20	65	0	60	30	18	33	18	1.94
660783--660928	40	3.7	40	90	0	211	31	16	30	21	1.95
660822--660887	20	3.2	22	62	16	59	30	19	30	19	1.97
662360--662441	42	2.0	41	92	2	137	36	24	23	15	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
662254--662632	95	4.0	95	87	3	458	37	22	21	18	1.94
663474--663536	27	2.3	28	78	10	67	26	31	20	20	1.98
663516--663632	52	2.2	53	84	1	173	29	33	20	17	1.95
663693--663756	27	2.4	27	89	0	92	29	35	15	18	1.92
677962--678005	20	2.2	20	91	0	70	43	18	4	34	1.70
683515--683594	21	3.9	21	83	3	101	12	25	18	43	1.85
710022--710072	22	2.3	22	86	6	68	11	0	39	49	1.40
711213--711256	20	2.2	20	84	11	56	27	0	2	70	0.99
714572--714601	16	1.9	15	93	6	51	13	0	6	80	0.91
725982--726006	4	6.2	4	100	0	50	28	0	0	72	0.86
733058--733109	23	2.3	23	89	0	77	51	13	1	32	1.52
737777--738527	370	2.0	370	98	0	1477	40	7	13	38	1.73
739234--739429	43	4.5	43	90	1	302	26	31	17	25	1.97
739233--739422	87	2.2	87	91	1	301	25	32	17	25	1.97
742274--742325	21	2.4	23	81	9	56	26	1	48	23	1.62
744645--744677	7	5.0	7	85	14	52	30	54	0	15	1.41
744645--744669	12	2.1	12	100	0	50	32	52	0	16	1.44
744711--744744	15	2.3	15	90	5	52	35	29	0	35	1.58
745099--745146	20	2.4	19	82	3	51	64	6	6	22	1.39
745249--745323	39	1.9	39	86	5	107	18	18	21	41	1.91
746249--746294	23	2.0	23	95	0	83	26	23	17	32	1.97
746252--746301	23	2.2	23	88	0	73	26	22	20	32	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
756489--756644	74	2.1	74	97	2	294	40	3	8	47	1.51
757366--757479	53	2.2	53	88	3	167	35	14	1	48	1.54
757790--757830	17	2.4	17	80	19	50	41	4	0	53	1.22
762155--762202	18	2.7	18	93	0	78	35	31	18	14	1.91
762402--762607	65	3.0	65	72	13	169	18	20	19	40	1.91
762329--762607	140	2.0	140	83	2	355	19	20	18	41	1.90
762470--762705	76	3.1	76	85	1	323	21	19	16	43	1.88
764680--764704	12	2.1	12	100	0	50	44	0	8	48	1.32
766348--766613	134	2.0	133	85	5	356	37	7	9	44	1.66
769914--769984	34	2.1	33	86	2	97	9	50	23	15	1.74
770440--770468	12	2.3	13	94	5	51	20	6	6	65	1.40
770877--770929	22	2.4	23	87	9	83	37	5	20	35	1.77
788091--788170	30	2.7	30	82	0	97	27	20	10	42	1.83
788089--788283	60	3.2	60	73	8	173	23	25	12	38	1.89
788153--788230	30	2.6	30	85	0	120	17	28	12	41	1.87
788121--788312	90	2.1	90	83	7	239	20	26	13	39	1.90
788209--788283	30	2.5	31	84	6	109	25	25	10	38	1.88
788209--788399	29	6.5	29	73	12	122	21	25	13	39	1.90
788121--788312	60	3.2	59	74	10	192	20	26	13	39	1.90
789186--789215	16	1.9	15	93	6	51	40	13	0	46	1.43
790937--791004	27	2.5	27	78	0	73	25	17	35	22	1.95
812890--812926	18	2.1	18	89	0	56	43	0	37	18	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
818223--818286	23	3.0	21	86	10	94	23	32	0	43	1.54
820091--820132	18	2.3	18	87	0	57	19	28	7	45	1.76
820373--820419	20	2.3	20	82	10	60	31	40	19	8	1.81
820558--820652	34	3.0	32	81	14	101	45	4	5	45	1.45
820613--820814	111	1.8	112	91	1	334	42	3	5	48	1.46
823820--824111	125	2.3	125	89	1	451	28	20	18	32	1.96
824144--824448	96	3.2	96	87	3	400	41	19	2	36	1.67
824474--824522	7	7.3	7	81	9	57	46	40	0	12	1.41
845578--845766	49	3.7	49	79	9	150	25	26	21	25	1.99
854576--854609	8	4.5	8	89	10	54	41	26	0	32	1.56

Tables:   1   2   3   4   5   6   7