Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397271.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_89.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4184555

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  11  of  11  ( 1249 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4011681--4011714
18
1.9
18
88
5
52
50
8
2
38
1.49
4017437--4017468
11
2.9
11
95
0
55
37
9
6
46
1.61
4026230--4026265
13
2.8
13
86
0
54
77
0
22
0
0.76
4026823--4026855
16
2.1
17
88
11
52
39
0
6
54
1.25
4027194--4027231
15
2.5
15
84
16
51
42
0
2
55
1.14
4026446--4028193
366
4.8
361
85
7
2168
44
7
7
40
1.60
4026446--4028193
723
2.4
716
85
7
2253
44
7
7
40
1.60
4028210--4028239
2
15.5
2
93
6
53
50
0
0
50
1.00
4033316--4033368
22
2.4
23
81
6
56
45
1
20
32
1.62
4033432--4033473
21
2.0
21
81
9
50
38
14
14
33
1.86
4049277--4049312
9
3.9
9
89
7
54
0
41
0
58
0.98
4049277--4049312
19
1.9
19
94
5
65
0
41
0
58
0.98
4064144--4064187
16
2.6
16
82
13
52
11
6
0
81
0.86
4064151--4064196
23
2.0
23
83
8
58
10
6
0
82
0.83
4068180--4068226
7
6.3
7
81
18
51
40
0
0
59
0.97
4068180--4068229
8
6.4
8
86
9
59
40
0
0
60
0.97
4068529--4068603
21
3.6
19
76
16
78
57
1
1
40
1.16
4068533--4068631
42
2.3
41
86
10
137
52
2
2
43
1.24
4080055--4080118
15
4.2
15
71
16
51
40
1
9
48
1.45
4080083--4080126
15
2.9
15
80
16
54
40
0
6
52
1.28
4079397--4080518
359
3.2
341
79
7
1141
44
8
7
39
1.64
4091318--4091392
38
2.0
38
100
0
150
34
36
16
13
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4096230--4096260
2
15.5
2
100
0
62
51
0
48
0
1.00
4102354--4102395
2
21.0
2
100
0
84
0
50
0
50
1.00
4110943--4111017
28
2.7
28
79
8
80
28
16
14
41
1.87
4111296--4111441
52
2.7
53
83
6
161
31
14
13
40
1.85
4111930--4111963
12
2.8
12
100
0
68
55
17
0
26
1.42
4111966--4112039
30
2.5
30
84
6
98
37
4
1
56
1.27
4119903--4119936
2
17.0
2
100
0
68
50
0
0
50
1.00
4126632--4126725
30
2.9
33
81
9
131
36
32
7
23
1.83
4131598--4131781
55
3.4
54
81
3
212
34
13
16
35
1.88
4131575--4131770
28
7.1
28
79
3
184
33
12
16
36
1.87
4132019--4132051
16
2.1
16
88
11
50
51
6
33
9
1.58
4133511--4133561
21
2.4
21
100
0
102
15
19
17
47
1.83
4142492--4142532
2
20.5
2
100
0
82
51
0
48
0
1.00
4146108--4146279
83
2.1
83
81
4
195
46
6
11
35
1.66
4146209--4146388
83
2.2
82
83
7
213
43
8
9
38
1.68
4146267--4146388
27
4.4
27
75
11
113
45
9
7
36
1.65
4146672--4146746
38
2.0
36
85
10
98
36
5
25
33
1.79
4146782--4146814
16
2.1
16
100
0
66
57
0
12
30
1.35
4148075--4148107
15
2.2
15
89
10
50
6
12
9
72
1.26
4149021--4149057
15
2.5
15
100
0
74
18
16
24
40
1.90
4160486--4160516
15
2.1
15
93
0
53
58
3
6
32
1.40
4167841--4168032
73
2.6
72
81
8
228
22
16
15
45
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4180157--4180196
15
2.7
15
81
14
55
80
2
0
17
0.83
4180158--4180197
17
2.2
17
86
8
53
80
2
0
17
0.83
4180155--4180197
22
2.0
21
86
13
61
79
2
0
18
0.85
4180675--4180734
21
2.9
21
87
9
95
23
18
20
38
1.93
4184097--4184551
250
1.8
250
86
3
657
30
30
17
21
1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11

The End!