genome.fa.s18.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397271.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_89.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4184555

Tables:   1   2   3   4   5   6   7   8   9   10   11   

This is table  8  of  11  ( 1249 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2745935--2746399	232	2.0	232	100	0	930	26	23	14	36	1.93
2749590--2749634	19	2.3	20	85	11	58	64	6	28	0	1.19
2754953--2755013	28	2.2	26	78	16	61	50	3	0	45	1.17
2773372--2773597	60	3.8	59	81	4	240	25	14	29	30	1.95
2782326--2782454	60	2.2	60	80	5	136	31	15	22	30	1.95
2785237--2785281	20	2.2	20	96	0	81	42	17	4	35	1.70
2788084--2788466	80	4.8	80	84	4	483	33	24	9	32	1.87
2788084--2788466	155	2.4	159	84	5	499	33	24	9	32	1.87
2794379--2794518	74	1.9	74	92	0	235	21	18	18	41	1.91
2796202--2796237	17	2.1	18	89	5	56	38	0	0	61	0.96
2796614--2796669	27	2.0	28	86	3	78	23	7	16	53	1.67
2801217--2801260	16	2.8	16	82	0	52	45	36	9	9	1.68
2806584--2806749	71	2.3	72	86	3	219	24	24	16	34	1.96
2809260--2809301	20	2.1	20	100	0	84	45	0	11	42	1.41
2814505--2814557	15	3.4	16	80	12	65	11	20	1	66	1.33
2815033--2815072	15	2.7	15	88	0	53	27	2	35	35	1.71
2817050--2817100	20	2.4	21	87	6	68	35	7	21	35	1.83
2819277--2819322	21	2.1	22	84	4	58	34	15	10	39	1.82
2822965--2823004	21	1.9	21	89	0	62	60	17	0	22	1.37
2822965--2823004	11	3.7	11	83	6	55	60	17	0	22	1.37
2834009--2834223	35	6.1	35	75	6	193	46	12	4	35	1.62
2834019--2834219	71	2.8	71	84	4	201	47	11	4	35	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2834025--2834216	106	1.8	106	82	4	253	46	12	5	35	1.64
2834504--2834533	15	2.0	15	93	0	51	20	30	13	36	1.90
2840703--2840743	15	2.7	16	77	11	50	48	17	7	26	1.73
2845007--2845061	23	2.4	23	84	0	65	25	12	21	40	1.89
2850882--2850936	28	1.9	29	92	3	94	45	10	7	36	1.67
2863179--2863210	2	16.0	2	93	0	55	46	0	50	3	1.17
2872217--2872302	45	1.9	44	90	2	136	37	20	12	29	1.90
2880690--2880717	10	2.8	10	100	0	56	64	0	0	35	0.94
2894284--2894344	31	2.0	31	90	0	95	45	16	11	26	1.81
2901257--2901309	26	2.0	26	82	7	63	58	11	5	24	1.54
2921502--2921551	26	1.9	26	100	0	100	36	4	4	56	1.37
2927000--2927068	28	2.5	28	87	0	93	49	7	18	24	1.73
2927020--2927098	28	2.8	27	79	11	79	43	6	22	27	1.78
2930186--2930217	2	16.0	2	100	0	64	50	0	0	50	1.00
2936468--2936518	20	2.5	20	93	0	84	39	11	23	25	1.89
2951097--2951127	16	1.9	16	93	0	53	6	9	9	74	1.23
2952427--2952469	23	1.9	22	85	4	59	48	0	0	51	1.00
2961363--2961389	2	13.5	2	100	0	54	51	0	0	48	1.00
2968253--2968377	63	2.0	63	88	3	189	29	12	15	42	1.84
2968594--2968633	21	1.9	21	84	0	53	22	12	20	45	1.84
2970860--2970947	36	2.4	36	90	7	151	25	10	36	28	1.88
2970860--2970973	36	3.1	36	86	6	104	28	10	30	29	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2979171--2979213	3	14.3	3	100	0	86	67	0	0	32	0.91
2992662--2992707	24	1.9	24	82	8	58	50	4	0	45	1.21
2992916--2992946	13	2.3	13	94	5	53	51	0	0	48	1.00
2996755--2996789	17	2.1	17	100	0	70	28	28	5	37	1.80
3001990--3002062	38	1.9	38	85	0	101	54	6	1	36	1.36
3003016--3003114	52	1.9	52	89	0	153	50	11	9	29	1.68
3003273--3003386	36	3.2	35	83	6	133	34	20	9	35	1.85
3009311--3009442	71	1.9	70	85	4	185	40	13	17	28	1.88
3010217--3010280	28	2.3	29	86	8	96	43	9	14	32	1.77
3010780--3010831	19	3.1	16	80	20	61	46	0	3	50	1.20
3010780--3010844	17	3.8	17	82	13	71	46	1	3	49	1.27
3010805--3010857	17	2.9	17	74	15	52	41	1	0	56	1.10
3011169--3011239	15	4.7	15	89	0	106	32	9	26	30	1.89
3011388--3011526	27	5.0	26	67	19	77	33	2	0	64	1.09
3011454--3011523	20	3.4	18	73	21	59	30	1	0	68	0.98
3011376--3011579	56	3.6	55	68	22	138	33	3	0	62	1.13
3011538--3011733	70	2.7	74	78	12	196	31	3	0	65	1.12
3011432--3011722	53	5.6	53	69	16	155	30	3	0	66	1.10
3011586--3011681	31	3.0	31	79	14	97	28	1	1	69	1.01
3011555--3011683	38	3.5	37	76	15	108	28	2	0	68	1.07
3011586--3011725	32	4.3	31	78	13	104	29	1	0	68	1.03
3011430--3011686	15	16.9	15	65	18	70	30	3	0	66	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3011681--3011733	26	2.0	27	85	3	72	33	3	0	62	1.13
3011823--3011868	24	1.9	24	82	8	58	36	13	8	41	1.75
3014193--3014235	12	3.2	15	78	21	51	16	23	13	46	1.83
3022702--3022727	7	3.7	7	100	0	52	69	0	30	0	0.89
3023118--3023207	34	2.7	34	96	1	164	55	8	18	16	1.67
3026554--3026580	2	13.5	2	100	0	54	0	0	48	51	1.00
3032957--3033008	23	2.3	23	80	6	61	46	7	23	23	1.78
3032908--3033086	74	2.4	74	79	3	182	42	12	21	24	1.87
3033548--3033662	31	3.8	31	75	6	119	40	11	16	31	1.84
3033516--3033664	61	2.5	60	81	7	176	40	12	17	30	1.86
3044130--3044181	26	2.0	26	85	7	70	44	0	5	50	1.26
3045169--3045251	40	2.1	40	93	0	139	16	15	30	37	1.90
3049111--3049140	9	3.3	9	95	0	51	23	0	3	73	0.98
3049188--3049226	20	1.9	21	94	5	71	51	28	5	15	1.64
3059310--3059351	2	21.0	2	100	0	84	50	0	0	50	1.00
3060589--3060641	21	2.5	22	78	9	56	9	13	0	77	0.99
3060700--3060741	16	2.5	18	81	14	54	33	2	4	59	1.31
3067135--3067171	19	1.9	19	94	0	65	51	5	8	35	1.55
3067155--3067646	86	5.8	86	86	4	694	40	8	7	43	1.65
3067447--3067609	78	2.1	79	88	1	238	41	8	7	42	1.65
3067748--3067797	12	4.3	12	80	16	61	52	6	0	42	1.26
3067748--3067797	23	2.2	23	96	0	91	52	6	0	42	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3081362--3081388	2	13.5	2	100	0	54	51	0	0	48	1.00
3081767--3081802	2	18.0	2	94	0	63	47	2	50	0	1.15
3084497--3084528	15	2.1	15	94	0	55	0	31	0	68	0.90
3085382--3085513	57	2.3	57	81	6	160	32	7	18	40	1.79
3086866--3086914	25	2.0	25	100	0	98	24	8	28	38	1.84
3088537--3088643	29	3.8	28	85	4	151	40	9	13	37	1.76
3088539--3088678	57	2.4	59	85	8	180	41	9	11	37	1.73
3094634--3094772	55	2.5	55	89	3	179	28	10	27	33	1.89
3094664--3094773	55	2.0	55	98	0	211	29	9	28	33	1.88
3095121--3095174	22	2.5	22	78	0	63	25	9	22	42	1.83
3095189--3095256	21	3.2	21	79	4	82	19	7	27	45	1.76
3095270--3095314	23	2.0	23	90	0	72	35	26	11	26	1.90
3095301--3095350	23	2.2	23	85	0	64	36	24	18	22	1.95
3095361--3095466	21	4.9	22	75	10	92	42	19	14	23	1.88
3096906--3096936	2	15.5	2	100	0	62	48	0	0	51	1.00
3099275--3099301	13	2.1	13	100	0	54	37	0	14	48	1.45
3110357--3110394	2	19.0	2	94	0	67	47	0	2	50	1.15
3112592--3112629	20	2.0	20	89	5	60	10	18	2	68	1.30
3115863--3115912	25	2.0	24	82	17	59	42	12	14	32	1.82
3123452--3123533	35	2.3	35	91	4	112	26	10	28	34	1.90
3125082--3125153	35	2.1	35	89	0	108	26	11	30	31	1.91
3133935--3134096	64	2.5	63	83	6	200	53	18	7	20	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3133986--3134084	33	3.1	33	69	16	98	51	20	7	21	1.70
3135445--3136810	686	2.0	685	95	0	2428	32	17	13	36	1.88
3140918--3141046	33	3.8	33	76	2	114	32	18	14	34	1.91
3142950--3142995	23	2.0	23	91	0	74	47	21	10	19	1.80
3143474--3143565	46	2.0	46	97	0	175	27	13	15	44	1.83
3148096--3148122	2	13.5	2	100	0	54	48	0	0	51	1.00
3155757--3155808	23	2.3	24	78	18	58	25	11	23	40	1.88
3157931--3158043	45	2.5	45	73	2	102	38	29	10	21	1.87
3161503--3161537	7	5.0	7	96	0	52	14	48	14	22	1.79
3165315--3165912	86	7.0	86	86	5	795	44	7	7	40	1.61

Tables:   1   2   3   4   5   6   7   8   9   10   11