genome.fa.s19.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397272.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_12.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3572271

Tables:   1   2   3   4   5   6   7   8   9   

This is table  3  of  9  ( 1018 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
797948--797999	20	2.6	21	82	11	65	80	0	15	3	0.85
797945--798035	25	3.6	25	78	12	87	78	3	15	3	1.02
797945--798037	41	2.3	40	80	9	98	77	3	16	3	1.03
797945--798010	24	2.7	23	79	11	62	78	1	16	3	0.95
797945--798003	29	2.0	30	87	9	86	79	0	16	3	0.86
798302--798342	19	2.2	18	91	4	64	46	0	2	51	1.14
803786--803847	30	2.1	30	87	0	88	51	4	30	12	1.61
804183--804253	25	3.0	23	80	11	72	35	4	1	59	1.26
804202--804253	25	2.1	25	92	0	86	28	5	1	63	1.28
810387--810442	29	2.0	29	89	3	87	35	14	12	37	1.84
815364--815421	16	3.6	16	70	9	55	63	20	0	15	1.30
815345--815418	32	2.3	32	100	0	148	62	25	0	12	1.30
826004--826102	28	3.5	26	78	11	81	45	8	8	38	1.63
825969--826110	29	4.9	30	80	10	127	42	8	9	39	1.67
826294--826413	28	4.2	28	81	8	127	43	9	6	40	1.63
837602--837863	68	3.9	68	76	4	215	37	18	8	36	1.81
851591--851964	185	2.0	191	87	6	548	48	14	16	20	1.81
856012--856036	3	8.3	3	100	0	50	68	0	0	32	0.90
856527--856552	2	13.0	2	100	0	52	50	0	0	50	1.00
859677--859701	3	8.3	3	100	0	50	68	0	32	0	0.90
860308--860359	22	2.4	22	75	9	54	44	0	0	55	0.99
860325--860386	31	2.1	31	84	6	83	46	1	1	50	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
860411--860468	27	2.2	27	87	3	91	44	0	3	51	1.18
860528--860556	14	2.0	15	93	6	51	27	3	0	68	1.05
876496--876653	75	2.1	74	85	1	208	36	12	16	34	1.86
877279--877321	12	3.6	12	90	0	68	18	34	9	37	1.83
879265--879303	6	6.5	6	84	0	51	15	30	2	51	1.57
884373--884416	21	2.0	22	86	4	63	29	0	9	61	1.27
885059--885094	12	2.9	13	88	12	58	41	16	41	0	1.48
892038--892062	9	2.8	9	100	0	50	48	0	40	12	1.40
897999--898063	32	2.0	32	82	5	78	47	12	7	32	1.69
898697--898741	16	2.7	18	80	16	60	77	0	2	20	0.87
903797--903827	2	15.5	2	100	0	62	0	0	48	51	1.00
911782--911838	19	3.0	19	84	0	78	17	15	19	47	1.83
915131--915170	19	2.0	20	85	4	55	25	30	5	40	1.77
915259--915338	38	2.1	38	95	0	142	36	3	27	32	1.75
916812--916865	28	2.0	26	89	7	81	66	3	0	29	1.09
916815--916865	9	5.6	9	75	13	50	64	3	0	31	1.11
916812--916863	13	3.8	13	78	9	59	67	3	0	28	1.08
917429--917523	30	3.2	30	81	12	99	54	4	3	37	1.36
923119--923149	16	1.9	16	93	0	53	51	12	0	35	1.40
923397--923428	2	16.0	2	100	0	64	50	0	0	50	1.00
923275--923650	131	2.8	133	87	4	519	35	8	14	42	1.76
930502--930531	2	15.0	2	100	0	60	50	50	0	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
938038--938083	2	23.0	2	100	0	92	0	50	0	50	1.00
939406--939722	164	1.9	164	86	2	449	35	7	13	43	1.72
951360--951410	20	2.5	20	81	6	59	39	13	11	35	1.82
963820--963851	3	10.7	3	100	0	64	68	0	31	0	0.90
984471--984547	35	2.2	35	86	4	102	36	27	14	22	1.92
988930--988987	29	2.0	29	86	6	82	24	10	17	48	1.78
990967--991004	20	1.9	20	89	10	60	50	0	10	39	1.37
991997--992034	7	5.4	7	84	9	51	71	0	28	0	0.87
995618--995787	76	2.3	75	82	11	199	37	8	2	51	1.47
1000825--1000874	20	2.5	19	78	12	55	32	0	22	46	1.52
1001092--1001131	20	2.0	20	85	0	53	35	17	17	30	1.93
1001848--1001881	10	3.4	10	91	0	59	8	0	41	50	1.34
1013580--1013797	47	4.7	47	80	6	237	29	16	29	23	1.97
1013640--1013958	163	2.0	163	84	1	415	28	15	29	26	1.96
1013804--1014231	47	9.2	47	76	9	355	28	15	28	26	1.96
1013804--1014234	92	4.7	91	82	4	490	28	16	28	26	1.96
1013789--1014231	139	3.2	138	78	6	473	27	16	29	26	1.97
1014220--1014282	23	2.7	23	76	7	65	26	19	26	26	1.99
1014840--1015020	62	2.9	62	86	0	254	20	19	21	38	1.94
1014834--1015020	31	6.0	31	85	0	230	20	19	21	37	1.94
1017519--1017619	23	4.4	23	96	0	166	14	30	34	19	1.92
1023850--1023970	40	3.0	40	83	5	156	21	14	28	35	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1023859--1023983	40	3.2	40	79	14	134	21	13	29	35	1.92
1023850--1023996	79	1.9	80	82	4	190	21	15	27	36	1.93
1030444--1030504	18	3.3	18	93	2	95	37	1	0	60	1.07
1042976--1043017	19	2.2	19	95	0	75	38	14	14	33	1.86
1047424--1048481	377	2.8	376	94	2	1792	32	22	19	25	1.97
1052748--1052795	25	2.0	24	87	4	69	43	6	20	29	1.76
1053213--1053279	35	1.9	35	90	0	107	50	11	11	25	1.73
1059960--1059994	2	17.5	2	100	0	70	48	0	0	51	1.00
1062340--1062377	2	19.0	2	100	0	76	50	0	0	50	1.00
1066305--1066333	13	2.3	13	94	5	51	31	13	17	37	1.89
1066689--1066723	7	5.0	7	100	0	70	28	14	42	14	1.84
1074734--1074771	15	2.4	16	86	8	51	47	7	2	42	1.46
1075462--1075542	32	2.5	32	83	0	117	39	12	13	34	1.82
1075393--1075602	115	1.8	114	84	2	287	44	9	11	34	1.73
1075647--1075711	29	2.2	29	83	5	78	47	9	7	35	1.64
1075636--1075711	29	2.6	28	80	16	75	46	11	7	34	1.70
1076700--1076778	26	3.0	26	76	7	88	59	2	1	36	1.19
1076708--1076745	19	2.1	18	85	14	51	60	0	0	39	0.97
1076757--1076969	117	1.9	104	85	5	203	57	3	1	32	1.25
1076907--1076945	17	2.1	20	86	13	57	74	2	0	23	0.94
1076924--1076983	24	2.5	24	75	20	61	60	3	1	35	1.23
1076975--1077027	26	2.0	26	82	7	63	52	1	3	41	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1077105--1077183	41	1.9	42	82	7	99	50	5	1	43	1.32
1077216--1077285	24	3.2	21	66	18	54	60	1	2	35	1.21
1077180--1077356	84	2.1	83	85	4	232	55	4	3	36	1.37
1077320--1077524	15	14.2	14	65	22	70	50	2	4	42	1.35
1077419--1077525	42	2.5	42	80	3	117	52	1	3	42	1.30
1082793--1082820	14	2.0	14	100	0	56	7	35	35	21	1.81
1083663--1083688	2	13.0	2	100	0	52	0	50	0	50	1.00
1087358--1087440	45	2.0	41	86	13	116	31	16	9	42	1.81
1090358--1090413	23	2.6	21	76	17	60	75	0	25	0	0.81
1093360--1093409	21	2.4	21	83	6	66	78	2	18	2	0.95
1093362--1093406	5	8.8	5	83	13	56	80	2	15	2	0.92
1096008--1096033	6	4.3	6	100	0	52	50	34	0	15	1.45
1111228--1111283	26	2.2	26	78	12	64	33	14	8	42	1.77
1113758--1114007	121	2.0	120	87	4	356	46	15	14	24	1.82
1123361--1123401	21	2.0	21	85	0	55	12	24	2	60	1.43
1124190--1124228	19	2.1	19	90	4	62	51	0	0	48	1.00
1132228--1132514	113	2.5	116	85	4	400	40	8	7	43	1.63
1135055--1135114	26	2.3	26	91	0	93	48	21	5	25	1.70
1138755--1138792	20	1.9	20	94	0	67	36	10	15	36	1.82
1144663--1144722	25	2.4	25	85	0	75	21	11	33	33	1.90
1145989--1146063	37	2.0	37	100	0	150	26	8	13	52	1.68
1147166--1147208	2	21.5	2	95	0	77	53	0	46	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1148006--1148067	21	3.0	21	95	0	106	37	17	19	25	1.94
1148553--1148597	4	12.0	4	77	13	51	20	0	2	77	0.87
1148553--1148597	22	2.0	23	91	4	74	20	0	2	77	0.87
1148556--1148604	22	2.2	22	83	16	66	18	2	2	77	0.96
1154961--1155091	67	2.0	67	82	0	163	23	14	26	35	1.93
1159529--1159582	20	2.7	19	86	8	72	50	11	7	31	1.66
1162750--1163152	90	4.5	92	72	19	325	49	5	7	37	1.54
1162660--1163165	180	2.8	180	87	5	701	49	6	6	37	1.54
1162990--1163061	37	1.9	37	83	5	92	48	4	11	36	1.58
1182959--1182997	19	2.0	19	85	5	51	66	25	0	7	1.18

Tables:   1   2   3   4   5   6   7   8   9