Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397272.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_12.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3572271

Tables:   1   2   3   4   5   6   7   8   9   

This is table  9  of  9  ( 1018 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3403620--3403748
51
2.5
51
85
0
159
27
17
11
43
1.84
3410949--3411034
33
2.6
33
87
5
111
30
2
0
67
1.03
3411110--3411141
15
2.1
15
94
0
55
31
0
0
68
0.90
3411082--3411150
33
2.1
34
84
13
90
28
1
1
68
1.07
3416595--3416682
28
3.1
28
80
0
95
43
17
11
28
1.83
3419167--3419227
31
2.1
29
82
11
72
8
36
4
50
1.54
3422619--3422666
19
2.6
19
93
3
80
39
2
0
58
1.10
3439892--3439991
28
3.6
27
89
6
130
23
13
22
42
1.88
3439973--3440027
18
3.1
18
91
0
92
12
16
27
43
1.84
3440060--3440120
26
2.3
26
83
5
79
32
14
14
37
1.87
3441453--3441542
22
4.1
22
76
2
83
27
11
17
43
1.83
3441409--3441529
21
5.7
21
72
6
57
28
14
18
38
1.90
3444131--3444331
73
2.7
74
78
13
182
30
4
1
63
1.23
3444279--3444335
7
8.7
7
74
14
59
26
0
0
73
0.83
3444222--3444320
25
4.0
25
69
16
71
30
2
1
66
1.09
3444259--3444349
20
4.4
21
78
12
73
34
1
1
63
1.09
3444296--3444337
15
2.9
15
85
3
59
28
0
0
71
0.86
3452143--3452248
39
2.9
36
77
13
90
46
1
0
50
1.18
3452144--3452221
39
2.0
38
85
2
102
44
1
1
52
1.17
3455720--3455744
2
12.5
2
100
0
50
48
0
0
52
1.00
3466701--3466749
12
3.6
14
76
18
50
32
4
2
61
1.26
3472958--3473008
24
2.2
23
82
3
57
13
1
7
76
1.09
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3472958--3473021
22
2.9
22
80
17
62
14
1
7
76
1.07
3473220--3473276
30
1.9
30
88
0
87
35
12
15
36
1.85
3479462--3479518
30
1.9
30
92
0
96
33
12
17
36
1.87
3482837--3482871
16
2.3
15
90
5
52
11
0
14
74
1.08
3489161--3489399
120
2.0
121
91
0
390
30
13
24
31
1.93
3494367--3494415
2
25.0
2
95
4
91
51
0
0
48
1.00
3496983--3497012
15
1.9
16
93
6
53
60
6
3
30
1.39
3503379--3503448
31
2.2
33
84
7
90
38
2
0
58
1.13
3503454--3503492
20
2.0
19
85
5
51
48
0
0
51
1.00
3504532--3504594
22
3.0
22
72
9
60
58
3
36
1
1.23
3504779--3504813
17
2.0
17
88
5
52
20
0
11
68
1.20
3510775--3510802
8
3.5
8
100
0
56
10
0
0
89
0.49
3511137--3511237
28
3.7
28
76
7
100
26
20
12
39
1.89
3511138--3511205
25
2.6
27
81
6
77
30
23
10
35
1.88
3511162--3511302
25
5.5
25
72
12
81
29
19
9
42
1.82
3512158--3512250
33
2.8
33
79
6
116
43
8
22
25
1.82
3517823--3517858
17
2.1
17
100
0
72
44
11
22
22
1.84
3518452--3518519
28
2.4
28
87
4
93
22
19
14
44
1.86
3518384--3518581
25
7.8
25
74
11
161
26
19
14
39
1.90
3528379--3528429
22
2.3
22
82
0
66
43
13
5
37
1.69
3529296--3529359
31
2.1
31
96
0
119
40
15
9
34
1.80
3530481--3530544
23
2.8
24
76
7
78
37
29
10
21
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3530529--3530591
22
2.8
23
75
4
65
41
26
12
19
1.87
3537322--3537370
17
2.9
17
82
14
57
20
2
0
77
0.87
3537332--3537370
19
2.1
18
90
4
60
20
0
0
79
0.73
3539540--3539594
24
2.3
23
75
9
56
18
1
9
70
1.22
3539541--3539595
25
2.3
23
78
12
56
16
1
9
72
1.18
3542924--3542949
12
2.2
12
100
0
52
23
15
0
61
1.33
3546799--3546858
19
3.0
19
75
15
59
35
1
0
63
1.05
3546803--3546841
15
2.6
16
84
12
55
33
2
0
64
1.08
3551489--3551550
31
2.0
31
96
0
115
33
8
22
35
1.84
3566275--3566471
23
8.7
23
69
8
127
30
13
18
37
1.89
3566310--3566471
43
3.6
44
78
4
146
31
14
17
36
1.90
3569230--3569286
24
2.4
24
93
0
96
28
29
12
29
1.93
3569778--3569812
17
2.1
17
88
0
52
22
11
8
57
1.61
3569916--3570118
108
1.9
108
92
0
343
36
15
5
41
1.70

Tables:   1   2   3   4   5   6   7   8   9

The End!