genome.fa.s21.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397274.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_228.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2969030

Tables:   1   2   3   4   5   6   7   8   

This is table  1  of  8  ( 846 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6056--6124	33	2.2	30	85	10	86	30	10	15	43	1.80
6259--6361	45	2.3	45	77	11	113	25	16	21	36	1.94
17811--17865	23	2.3	25	84	9	78	52	0	7	40	1.29
20616--20683	35	1.9	35	88	5	102	29	8	10	51	1.66
37794--38072	50	5.6	49	74	7	172	32	12	18	36	1.88
38093--38325	48	4.8	48	75	8	206	21	14	18	45	1.85
38093--38325	96	2.4	96	81	7	269	21	14	18	45	1.85
40191--40328	58	2.4	58	82	2	152	29	20	12	37	1.89
40743--40798	29	1.9	29	88	0	85	12	17	14	55	1.69
40745--40812	29	2.3	29	82	0	73	16	17	13	52	1.74
41059--41145	36	2.4	36	82	0	93	21	25	14	37	1.92
43016--43094	38	2.1	38	83	4	97	26	6	12	54	1.62
43413--43446	6	5.7	6	85	0	50	14	17	35	32	1.91
45778--45803	12	2.2	12	100	0	52	38	7	23	30	1.83
67274--67307	9	3.6	10	88	11	54	8	5	0	85	0.75
69331--69357	3	9.0	3	100	0	54	66	0	0	33	0.92
77187--77229	4	10.8	4	100	0	86	51	0	23	25	1.49
83771--83949	91	2.0	91	95	0	322	49	2	6	41	1.44
90171--90213	19	2.2	20	87	4	61	41	0	2	55	1.12
96549--96591	19	2.3	19	84	8	52	34	2	27	34	1.70
96562--96598	19	1.9	19	94	0	65	40	0	29	29	1.57
108633--108680	13	3.6	13	80	11	53	43	0	56	0	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
108632--108683	24	2.3	24	75	21	58	42	0	57	0	0.98
108643--108688	21	2.3	19	88	7	65	43	0	56	0	0.99
114864--114953	44	2.0	44	100	0	180	45	16	8	28	1.78
115245--115270	13	2.0	13	100	0	52	46	7	30	15	1.74
121195--121228	5	6.8	5	100	0	68	20	38	0	41	1.53
138384--138409	5	5.2	5	100	0	52	0	19	42	38	1.51
139265--139339	27	2.8	26	80	7	71	41	20	16	22	1.90
139297--139346	26	1.9	26	91	0	82	32	20	24	24	1.98
160988--161023	18	1.9	18	88	5	54	36	0	0	63	0.94
161200--161249	24	2.0	25	82	17	61	44	0	0	56	0.99
161377--162275	480	1.9	463	82	6	1117	36	7	5	48	1.56
167873--167914	21	2.0	21	85	0	57	26	4	0	69	1.08
174963--174989	2	13.5	2	100	0	54	48	0	0	51	1.00
179559--179602	2	22.0	2	100	0	88	50	0	0	50	1.00
180816--180872	24	2.4	24	93	0	96	28	8	21	42	1.82
180883--180960	39	2.0	39	84	0	102	33	14	14	38	1.86
186961--187030	22	3.1	22	77	4	77	34	0	0	65	0.93
187146--187197	28	1.9	28	92	7	90	34	5	1	57	1.33
200165--200196	15	2.0	17	88	11	50	50	6	0	43	1.27
204535--204731	97	2.0	97	91	0	313	32	17	18	31	1.94
215634--215667	6	5.7	6	89	0	50	35	0	64	0	0.94
226714--227117	139	3.0	139	72	17	452	27	18	37	16	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
226884--226966	25	3.5	25	66	15	68	25	15	39	19	1.91
226875--226965	46	2.0	46	95	4	166	26	16	39	17	1.91
231123--231148	5	5.2	5	100	0	52	80	0	0	19	0.71
235509--235584	31	2.6	28	78	19	75	57	2	3	35	1.31
235527--235598	25	2.7	27	78	16	69	61	0	4	34	1.16
238986--239012	2	13.5	2	100	0	54	51	0	0	48	1.00
240952--240982	2	15.5	2	100	0	62	51	0	0	48	1.00
281694--281731	17	2.2	17	86	9	51	57	0	0	42	0.98
300106--300611	139	3.6	138	79	3	480	42	10	9	37	1.72
304591--304660	28	2.4	29	82	13	83	37	4	2	55	1.34
329324--329364	17	2.5	16	88	4	55	51	0	0	48	1.00
331604--331657	19	2.8	19	78	15	67	31	0	0	68	0.90
331637--331697	30	1.9	32	83	9	81	31	9	1	57	1.41
340069--340101	14	2.4	14	94	0	57	81	3	15	0	0.80
356243--356269	14	1.9	14	100	0	54	37	14	11	37	1.82
356357--356381	6	4.2	6	100	0	50	36	0	0	64	0.94
369151--369245	32	2.9	31	81	9	91	29	2	2	66	1.15
369151--369244	34	2.8	33	84	6	109	28	2	2	67	1.14
369324--369350	14	1.9	14	100	0	54	22	0	0	77	0.76
371036--371109	33	2.2	33	95	0	130	10	44	6	37	1.66
371086--371124	15	2.6	15	95	0	69	12	38	10	38	1.78
372766--372820	18	3.1	18	78	5	58	43	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
372859--372957	15	6.5	15	74	10	53	53	0	0	46	1.00
372859--372897	19	2.1	19	85	9	53	48	0	0	51	1.00
383392--383452	32	1.9	32	93	0	104	42	16	1	39	1.58
383602--383643	22	1.9	21	85	9	57	38	2	0	59	1.10
390364--390404	21	2.0	20	85	4	55	34	9	12	43	1.75
394651--394675	3	8.3	3	100	0	50	0	36	0	64	0.94
397385--397417	2	16.5	2	100	0	66	51	0	0	48	1.00
397548--397594	21	2.1	22	84	7	60	55	10	8	25	1.62
410591--410646	26	2.2	26	93	0	94	53	16	17	12	1.73
411294--411326	2	16.5	2	93	0	57	51	3	0	45	1.16
424375--424406	2	16.5	2	93	6	57	50	0	0	50	1.00
424938--425136	33	5.9	32	67	20	104	31	2	0	65	1.10
424991--425066	30	2.7	27	81	15	91	34	1	0	64	1.02
425004--425062	30	2.0	30	93	0	100	33	1	0	64	1.04
425093--425123	14	2.1	15	94	5	55	32	0	0	67	0.91
425853--425890	18	2.1	18	85	9	51	36	5	0	57	1.21
432682--432707	3	8.7	3	100	0	52	0	34	34	30	1.58
434102--434239	46	3.0	46	89	3	208	36	11	17	34	1.86
437034--437092	30	2.0	30	89	0	91	15	20	47	16	1.83
438055--438094	15	2.6	15	81	18	55	85	2	2	10	0.80
450134--450164	2	15.5	2	100	0	62	48	0	51	0	1.00
450330--450355	3	8.7	3	100	0	52	34	0	0	65	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
451341--451370	13	2.3	13	94	0	51	0	16	0	83	0.65
470094--470158	32	2.0	32	96	0	121	49	15	12	23	1.78
492071--492117	10	4.8	10	77	15	53	48	0	2	48	1.13
492071--492118	18	2.5	20	80	10	55	47	0	2	50	1.12
510766--510831	33	2.0	33	88	5	98	19	15	27	37	1.92
516274--516334	25	2.5	25	84	7	72	73	3	3	19	1.11
529907--529945	2	19.5	2	100	0	78	48	0	0	51	1.00
532978--533002	10	2.5	10	100	0	50	0	0	8	92	0.40
542199--542331	69	1.9	69	90	0	212	19	15	18	46	1.84
546685--546717	13	2.5	13	90	0	57	33	0	3	63	1.10
551531--551641	56	2.0	56	92	1	188	21	14	24	39	1.91
561964--561988	2	12.5	2	100	0	50	0	52	0	48	1.00
568931--568988	28	2.1	28	86	0	80	31	24	13	31	1.94
577820--577863	23	2.0	21	86	8	61	52	2	13	31	1.53
588763--588906	56	2.5	60	76	12	154	51	11	12	25	1.72
590751--590803	26	2.2	23	83	10	61	45	1	0	52	1.11
597742--597766	12	2.1	12	100	0	50	48	0	8	44	1.32
606909--606964	29	1.9	29	81	0	67	23	19	14	42	1.88
612365--612410	23	2.0	23	82	0	56	43	2	4	50	1.34
614902--614985	38	2.2	39	86	2	125	38	14	3	44	1.62
618661--618700	21	1.9	21	84	0	53	50	7	7	35	1.59
626808--626834	2	13.5	2	100	0	54	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
632405--632451	15	3.1	15	100	0	94	34	6	46	12	1.67
633482--633524	19	2.3	19	80	12	52	20	0	2	76	0.89
633479--633524	18	2.5	19	82	6	60	21	0	2	76	0.90
634671--634731	27	2.2	26	83	11	77	62	8	9	19	1.51
640052--640077	2	13.0	2	100	0	52	50	0	0	50	1.00
642368--642417	25	2.0	25	96	0	91	34	12	20	34	1.89
661826--661879	27	2.0	27	96	0	99	14	22	20	42	1.88
665233--665292	28	2.2	26	82	11	68	36	1	5	56	1.31
666154--666182	10	2.7	11	89	10	51	44	0	17	37	1.49
668091--668193	54	1.9	54	82	4	127	34	14	18	32	1.91

Tables:   1   2   3   4   5   6   7   8