genome.fa.s21.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397274.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_228.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2969030

Tables:   1   2   3   4   5   6   7   8   

This is table  2  of  8  ( 846 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
675651--675722	33	2.2	32	85	7	92	66	0	4	29	1.10
675652--675722	32	2.1	34	87	7	101	66	0	4	29	1.11
677077--677182	53	2.0	53	100	0	212	35	22	16	24	1.95
680039--680137	50	2.0	50	83	0	126	43	8	17	31	1.78
682021--682142	50	2.4	51	87	4	176	40	5	22	31	1.78
690623--690659	19	1.9	19	100	0	74	32	16	24	27	1.96
693550--693600	4	13.2	4	77	8	52	54	23	0	21	1.44
693566--693600	18	1.9	18	88	0	52	57	22	0	20	1.41
693552--693618	8	8.1	8	80	6	53	53	31	0	14	1.42
708023--708082	30	2.0	30	83	6	77	60	1	0	38	1.07
711504--711566	29	2.2	29	83	11	76	38	22	7	31	1.83
711867--711933	27	2.4	27	82	7	82	46	1	1	50	1.19
712083--712121	21	1.9	20	85	15	53	17	7	2	71	1.21
712398--712448	18	3.1	17	76	23	56	25	5	0	68	1.12
716569--716612	21	2.0	22	82	4	54	18	18	13	50	1.79
727435--727506	21	3.3	21	92	3	108	30	26	12	30	1.93
727615--727660	21	2.1	22	88	4	67	30	21	10	36	1.88
727742--727814	21	3.5	21	73	12	69	34	17	6	41	1.76
727764--727827	21	3.0	21	77	8	67	35	17	6	40	1.75
727758--727819	22	2.9	21	78	4	70	35	17	4	41	1.71
727745--727827	43	1.9	43	82	4	105	34	18	7	39	1.78
727452--727938	167	2.9	164	80	5	528	33	18	11	36	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
727913--727958	21	2.2	21	84	0	56	41	23	8	26	1.83
728000--728080	29	2.8	29	98	0	153	23	14	17	44	1.86
728236--728273	17	2.4	15	87	12	58	76	0	10	13	1.02
728535--728584	21	2.3	22	83	13	68	30	16	10	44	1.80
737572--737659	34	2.6	34	98	0	167	37	6	5	50	1.53
740833--740857	12	2.1	12	100	0	50	48	0	0	52	1.00
741114--741140	14	1.9	14	100	0	54	37	14	11	37	1.82
744181--744211	3	10.0	3	93	6	53	0	32	0	67	0.91
754252--754687	84	5.2	84	85	3	497	14	30	11	42	1.81
757080--757135	28	2.0	28	100	0	112	46	25	17	10	1.80
762387--762442	29	1.9	29	82	7	69	55	5	8	30	1.53
762540--762583	23	2.0	23	86	4	63	54	2	4	38	1.33
764569--764804	126	1.9	126	82	5	298	37	13	18	30	1.90
766039--766128	47	1.9	47	93	0	153	31	22	14	32	1.94
766836--766873	8	4.6	8	87	6	58	60	0	0	39	0.97
767820--767893	37	2.0	36	86	2	103	22	4	9	63	1.41
781709--781745	15	2.5	15	91	4	58	51	0	0	48	1.00
781699--781764	18	3.9	18	76	13	59	50	0	0	50	1.00
783824--783850	4	6.8	4	100	0	54	22	0	0	77	0.76
784256--784293	12	3.2	12	82	10	51	60	2	0	36	1.11
793391--793428	16	2.3	17	86	4	51	42	5	0	52	1.24
793391--793453	20	3.4	18	76	19	58	41	6	0	52	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
808458--808496	13	2.7	15	88	7	55	25	0	0	74	0.82
809220--809253	16	2.1	17	94	5	61	23	2	0	73	0.97
810263--810317	27	2.0	27	85	0	74	63	1	0	34	1.05
810540--810582	17	2.6	16	82	10	50	46	2	2	48	1.27
819355--819413	30	2.0	30	87	9	86	37	5	1	55	1.32
822525--822555	2	15.5	2	93	0	53	0	51	3	45	1.17
838171--838203	16	2.1	16	88	5	50	72	6	3	18	1.18
838670--838711	11	3.8	12	81	12	54	30	0	0	69	0.89
839621--839675	28	2.0	28	92	0	92	61	12	1	23	1.40
840853--840905	28	1.9	27	88	3	79	62	13	1	22	1.40
845720--845770	22	2.4	22	96	3	95	62	3	15	17	1.47
853184--853238	15	3.4	16	73	12	51	40	5	1	52	1.35
868547--868610	3	21.3	3	96	0	119	32	1	0	65	1.02
875600--875635	19	1.9	19	88	5	56	52	5	0	41	1.24
881857--881887	2	16.0	2	93	6	55	51	0	0	48	1.00
882724--882756	16	1.9	18	88	11	52	33	9	12	45	1.73
890970--891007	16	2.4	16	86	4	51	52	0	0	47	1.00
892134--892166	16	2.1	16	94	0	57	42	18	9	30	1.81
892836--892885	26	1.9	26	84	8	66	50	0	2	48	1.12
893179--893213	14	2.6	13	86	8	52	48	0	51	0	1.00
893283--893316	15	2.2	16	89	5	52	55	0	44	0	0.99
896025--896084	3	20.0	3	96	0	111	65	0	1	33	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
898900--899839	135	7.0	134	85	4	1169	44	12	26	17	1.84
898967--899744	273	2.8	272	91	2	1222	43	13	26	16	1.85
900482--900513	2	16.0	2	93	0	55	46	0	3	50	1.17
929871--929908	2	19.0	2	88	0	58	47	2	0	50	1.15
932456--932516	29	2.0	30	87	6	88	34	6	3	55	1.42
943026--943114	41	2.1	41	83	8	108	51	3	13	31	1.57
943692--943798	41	2.5	42	78	12	105	49	12	14	24	1.76
946867--946904	12	3.2	12	78	14	51	55	7	18	18	1.66
951515--951599	40	2.0	43	91	6	140	68	2	2	27	1.14
955835--955990	47	3.4	46	77	5	136	33	7	15	42	1.75
957937--958045	30	3.7	29	80	3	112	54	1	5	38	1.35
958041--958072	11	3.0	11	95	4	57	53	0	0	46	1.00
958466--958507	2	21.0	2	95	0	75	50	2	47	0	1.14
972175--972199	13	1.9	13	100	0	50	32	36	8	24	1.84
977652--977699	19	2.6	18	83	9	69	35	2	2	60	1.20
983255--983296	16	2.7	16	81	3	50	45	0	7	47	1.30
989900--989967	23	2.9	22	80	10	73	17	22	5	54	1.64
989918--989967	23	2.2	23	89	3	75	18	22	4	56	1.58
1000336--1000571	116	2.0	119	83	4	300	34	15	16	33	1.90
1009015--1009048	2	17.0	2	93	0	59	47	0	2	50	1.16
1009279--1009304	2	13.0	2	100	0	52	50	0	0	50	1.00
1011606--1012164	282	2.0	282	83	2	719	30	18	20	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1023201--1023324	62	2.0	62	100	0	248	41	22	6	29	1.78
1026392--1026437	24	2.0	22	83	8	56	58	4	17	19	1.55
1031249--1031305	29	1.9	30	85	3	80	40	5	5	49	1.48
1032517--1032578	27	2.2	28	83	13	76	54	3	1	40	1.26
1032596--1032644	16	3.4	16	69	30	56	42	4	0	53	1.20
1032602--1032697	26	3.8	25	78	13	92	40	3	1	55	1.23
1032588--1032662	26	2.6	27	79	16	80	41	4	1	53	1.28
1032544--1032712	90	1.9	90	92	0	284	43	3	0	52	1.23
1032650--1032738	21	4.2	21	72	13	58	41	2	0	56	1.12
1032749--1032806	27	2.2	26	85	11	82	43	3	5	48	1.42
1032884--1032979	40	2.4	38	75	14	95	38	1	1	59	1.11
1032931--1032961	16	1.9	16	100	0	62	45	3	0	51	1.17
1032601--1032941	147	2.3	148	83	11	441	41	2	1	54	1.23
1032890--1032982	43	2.2	42	76	17	104	39	1	1	58	1.13
1032510--1032994	240	2.0	238	80	12	541	41	2	1	54	1.24
1032834--1033048	107	2.1	101	87	6	306	39	1	1	57	1.18
1032834--1033190	107	3.3	111	78	14	294	38	1	2	57	1.18
1033131--1033177	22	2.1	22	88	0	67	46	2	0	51	1.13
1033163--1033200	18	2.1	18	85	9	51	39	0	0	60	0.97
1033158--1033206	14	3.7	14	76	20	52	38	0	0	61	0.96
1033159--1033263	42	2.5	41	78	14	117	40	2	0	55	1.21
1035959--1036001	22	1.9	23	85	4	61	16	4	4	74	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1038310--1038362	26	2.0	26	100	0	106	30	15	18	35	1.92
1038455--1038576	39	3.1	39	72	9	113	20	19	15	44	1.87
1038521--1038666	39	3.8	37	73	9	91	18	17	16	47	1.82
1038618--1038697	36	2.2	35	88	4	115	23	20	11	45	1.83
1042592--1042642	28	1.9	28	84	11	72	43	33	5	17	1.73
1043413--1043448	9	4.0	9	85	0	54	75	2	0	22	0.94
1047757--1048802	350	2.9	352	83	7	1276	39	7	7	45	1.60
1050289--1050342	17	3.4	17	67	15	51	53	5	3	37	1.42
1050284--1050350	31	2.4	26	73	21	71	50	4	2	41	1.37
1060644--1060697	27	2.0	27	85	3	74	35	1	0	62	1.06

Tables:   1   2   3   4   5   6   7   8