genome.fa.s21.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397274.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_228.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2969030

Tables:   1   2   3   4   5   6   7   8   

This is table  7  of  8  ( 846 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2498714--2498766	23	2.3	23	93	0	88	28	28	11	32	1.91
2502263--2502331	30	2.3	31	89	2	104	28	23	14	33	1.94
2504377--2504428	23	2.2	23	83	10	61	38	7	1	51	1.42
2519057--2519090	11	3.0	11	87	8	50	58	8	2	29	1.43
2519911--2520055	15	10.0	14	65	24	70	45	1	1	51	1.18
2519942--2520028	40	2.1	41	87	2	131	44	2	1	51	1.21
2520307--2520337	16	1.9	16	100	0	62	51	0	3	45	1.17
2521482--2521508	13	2.1	13	100	0	54	48	7	0	44	1.31
2524146--2524188	2	21.5	2	95	0	77	48	0	0	51	1.00
2524357--2524411	24	2.3	25	81	9	71	49	14	3	32	1.61
2526794--2526835	19	2.2	20	82	4	50	66	11	11	9	1.44
2533393--2533445	27	2.0	27	88	7	81	28	16	26	28	1.97
2550037--2550098	33	1.9	32	84	15	83	58	1	1	38	1.18
2550387--2550417	2	15.5	2	93	0	53	51	3	0	45	1.17
2558600--2558626	2	13.5	2	100	0	54	51	0	0	48	1.00
2559805--2559873	28	2.4	27	79	11	75	63	0	0	36	0.94
2566921--2566963	2	21.5	2	95	0	77	51	0	0	48	1.00
2580419--2580449	2	15.5	2	100	0	62	48	0	0	51	1.00
2580685--2580842	79	2.0	79	86	4	221	34	12	21	31	1.91
2580788--2580886	51	1.9	51	87	0	144	39	18	16	26	1.91
2584543--2584640	45	2.2	45	79	0	106	34	13	15	36	1.86
2584490--2584713	121	1.9	121	83	1	297	33	14	14	37	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2594367--2594418	26	2.0	27	84	3	70	34	17	5	42	1.73
2597390--2597465	28	2.6	28	85	4	98	59	1	3	35	1.24
2609097--2609128	2	16.0	2	93	0	55	53	0	46	0	1.00
2609822--2609861	21	2.0	20	85	5	53	20	5	2	72	1.15
2610512--2610590	35	2.3	35	88	0	113	34	17	11	36	1.86
2611609--2611654	22	2.1	22	88	8	67	43	8	8	39	1.66
2611646--2611687	22	1.9	22	85	0	57	54	7	7	30	1.54
2616283--2616367	23	3.7	23	90	0	116	34	17	28	20	1.95
2625015--2625084	34	2.1	34	100	0	140	27	20	15	37	1.93
2631599--2631629	13	2.4	13	100	0	62	25	6	12	54	1.62
2634445--2634494	26	1.9	26	88	8	75	30	8	34	28	1.86
2636816--2636868	23	2.3	23	100	0	106	43	3	11	41	1.58
2643125--2643149	12	2.1	12	100	0	50	52	8	8	32	1.60
2643830--2643977	32	5.2	29	73	16	80	30	12	15	41	1.85
2643873--2643977	27	3.9	26	75	14	81	27	14	16	41	1.86
2644102--2644200	45	2.2	45	81	0	108	26	19	23	31	1.98
2645754--2645809	16	3.7	15	79	6	60	25	0	5	69	1.09
2646344--2646385	22	2.0	21	85	4	57	50	0	2	47	1.14
2646651--2646683	4	8.8	4	87	12	52	24	0	0	75	0.80
2648423--2648477	24	2.2	24	78	15	58	43	9	5	41	1.59
2671241--2671303	31	2.1	31	84	3	83	61	22	6	9	1.49
2672584--2672631	25	2.0	25	83	4	62	45	0	2	52	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2680779--2680902	7	18.3	7	67	24	54	59	1	0	38	1.07
2680837--2680881	13	3.4	13	79	14	56	62	0	0	37	0.96
2680779--2680895	48	2.3	52	81	11	145	59	1	0	38	1.07
2680852--2680895	22	2.0	21	91	4	70	61	0	0	38	0.96
2690251--2690289	20	2.0	20	94	0	69	56	5	5	33	1.43
2690444--2690519	34	2.2	34	83	0	89	38	17	13	31	1.88
2706128--2706195	33	2.1	33	86	10	95	66	1	2	29	1.15
2706131--2706283	50	3.2	47	79	16	147	67	1	2	28	1.11
2706138--2706266	26	4.7	27	69	23	90	66	1	2	29	1.13
2706234--2706318	33	2.5	33	83	5	91	68	0	3	28	1.06
2706269--2706417	29	5.2	28	66	26	82	63	0	4	31	1.20
2706263--2706443	33	5.0	34	70	17	107	62	1	5	30	1.24
2706354--2706399	22	2.1	22	88	8	67	69	0	0	30	0.89
2706356--2706399	7	6.1	7	85	15	63	70	0	0	29	0.88
2706363--2706433	24	2.9	23	76	17	72	66	0	2	30	1.06
2706271--2706502	114	2.0	114	95	3	423	61	0	5	32	1.24
2706354--2706433	23	3.4	23	76	17	60	66	0	2	31	1.05
2727573--2727636	29	2.2	29	88	0	101	50	10	12	26	1.73
2739914--2740039	63	2.0	63	92	0	207	26	17	23	33	1.96
2748981--2749101	51	2.4	51	84	5	181	41	12	12	33	1.80
2749217--2749326	52	2.1	52	86	6	152	34	10	1	53	1.45
2756093--2756149	21	2.8	20	82	10	71	68	1	10	19	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2764967--2766162	249	4.8	248	78	7	1081	49	6	9	33	1.60
2765546--2765583	20	1.9	20	88	0	58	55	2	2	39	1.28
2764967--2766164	495	2.4	493	79	6	1203	49	6	9	33	1.60
2766974--2767004	14	2.2	14	100	0	62	51	6	12	29	1.65
2775606--2775747	28	4.8	29	78	10	137	42	9	9	38	1.70
2775609--2775736	59	2.2	58	85	4	168	40	9	8	41	1.68
2776091--2776118	8	3.5	8	100	0	56	75	0	25	0	0.81
2777531--2777580	3	16.7	3	87	8	75	34	0	2	64	1.05
2783398--2783477	29	2.9	28	87	5	108	40	2	12	45	1.56
2783495--2783563	28	2.4	30	80	4	79	39	10	8	42	1.70
2783480--2783574	30	3.2	29	77	7	102	45	9	9	35	1.69
2787428--2787644	116	1.9	116	81	0	263	26	17	16	39	1.91
2793563--2793601	2	20.0	2	94	5	71	48	0	0	51	1.00
2793724--2793775	16	3.3	16	94	2	88	51	0	0	48	1.00
2800341--2800371	16	1.9	16	93	0	53	32	0	38	29	1.57
2804933--2805261	126	2.6	125	82	6	348	36	30	13	19	1.90
2805055--2805289	122	1.9	124	84	5	314	36	30	12	20	1.90
2806385--2806413	2	14.5	2	100	0	58	48	0	0	51	1.00
2810256--2810293	2	19.0	2	88	0	58	2	2	47	47	1.30
2812263--2812515	125	2.0	125	93	0	434	28	13	12	45	1.80
2815989--2816023	14	2.4	14	90	4	52	22	2	0	74	0.95
2831428--2831476	14	3.6	14	78	10	57	24	2	8	65	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2846006--2846046	21	2.0	21	90	0	64	60	4	4	29	1.38
2847259--2847324	31	2.2	31	88	2	98	27	30	12	30	1.92
2847804--2847855	3	17.3	3	95	0	68	67	7	0	25	1.17
2848800--2848845	24	2.0	23	84	12	60	41	0	0	58	0.98
2863399--2863425	2	13.5	2	100	0	54	51	0	0	48	1.00
2865657--2865959	150	2.0	151	95	0	545	41	12	12	33	1.82
2875399--2875556	61	2.6	62	71	13	139	26	17	31	24	1.97
2877267--2877321	27	2.0	27	92	0	92	38	25	18	18	1.93
2881428--2881467	20	1.9	20	90	10	62	45	15	7	32	1.74
2881487--2881588	46	2.2	46	87	0	141	43	22	3	30	1.71
2883285--2883328	20	2.2	20	87	4	61	36	15	15	31	1.90
2892453--2892540	38	2.3	39	88	2	133	34	13	6	45	1.70
2893174--2893219	22	2.1	22	92	8	76	23	23	23	28	2.00
2900471--2900544	35	2.1	35	84	0	94	31	13	22	32	1.93
2903588--2903747	71	2.2	72	86	6	227	38	17	12	31	1.87
2908969--2909075	48	2.2	48	93	0	178	27	15	28	28	1.96
2909246--2909452	72	2.8	74	80	3	215	24	20	20	34	1.96
2916326--2916353	2	14.0	2	100	0	56	50	0	0	50	1.00
2921215--2921253	19	2.0	19	85	5	51	15	5	17	61	1.51
2924047--2924096	26	2.0	26	88	4	75	48	6	10	36	1.61
2927085--2927113	14	2.1	14	100	0	58	48	0	17	34	1.47
2928847--2928890	23	1.9	23	90	0	70	47	18	11	22	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2929965--2930007	13	3.2	13	83	9	50	69	4	0	25	1.07
2934323--2934355	2	16.5	2	100	0	66	51	0	0	48	1.00
2935445--2935472	14	2.0	14	100	0	56	42	28	14	14	1.84
2938335--2938448	28	4.1	27	78	6	120	24	14	7	52	1.68
2938755--2938861	56	1.9	56	82	3	135	23	17	8	50	1.73
2938819--2938899	28	2.9	27	85	3	99	23	23	7	45	1.78
2939894--2939981	34	2.6	33	85	5	104	68	0	2	29	1.02
2940106--2940250	54	2.7	54	91	4	238	28	17	8	45	1.78
2944296--2944397	36	2.6	40	74	13	104	57	2	0	39	1.14
2945121--2945279	86	1.8	86	97	0	300	46	8	10	34	1.69

Tables:   1   2   3   4   5   6   7   8