genome.fa.s23.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397276.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_106.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2845708

Tables:   1   2   3   4   5   6   

This is table  2  of  6  ( 653 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
567582--567898	171	1.9	161	84	2	341	34	13	14	34	1.85
567957--572769	171	28.3	172	76	6	3745	38	12	13	35	1.82
569816--570217	160	2.5	159	80	6	383	41	10	12	34	1.78
572795--576651	171	22.6	170	77	6	3059	39	11	13	34	1.82
572831--576651	342	11.2	341	79	5	3456	39	11	13	34	1.82
576882--579493	171	15.3	170	78	4	2126	38	12	13	35	1.82
579724--580661	170	5.5	170	73	3	693	33	13	11	37	1.82
583633--583680	8	6.0	8	78	9	53	64	0	35	0	0.94
583628--583678	16	3.1	16	88	8	68	64	0	35	0	0.94
627644--627737	31	3.0	31	85	0	107	34	15	17	32	1.91
628471--628527	23	2.5	22	86	8	87	31	29	14	24	1.94
628770--628870	47	2.1	47	81	3	123	29	28	11	29	1.92
628877--628965	23	4.0	23	82	8	103	29	35	10	24	1.88
629081--629146	23	2.9	23	88	0	87	27	34	9	28	1.87
632423--632539	31	3.6	31	84	4	144	35	17	17	30	1.92
632423--632568	31	4.6	31	80	9	102	34	17	16	31	1.92
633258--633315	23	2.5	23	91	0	98	34	29	12	24	1.91
633665--633877	46	4.7	46	74	11	177	26	32	12	28	1.92
633677--633799	23	5.4	23	89	5	180	30	31	11	26	1.91
633786--633845	23	2.6	24	78	5	70	26	30	10	33	1.89
633913--633981	23	3.0	23	86	0	93	24	37	11	26	1.89
637180--637216	19	2.0	19	89	5	58	35	5	21	37	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
647158--647194	19	2.0	19	89	5	58	37	21	5	35	1.77
650631--650724	36	2.6	36	94	0	170	28	15	11	43	1.82
669321--669388	35	1.9	36	84	3	93	42	16	25	16	1.87
692829--692996	89	1.9	89	86	4	241	45	5	8	39	1.59
692827--693040	89	2.4	89	75	12	224	45	6	8	40	1.59
693006--693331	123	2.7	119	82	8	374	42	6	11	39	1.66
707951--708071	51	2.4	51	77	0	125	34	25	15	23	1.95
722520--722738	120	1.8	119	84	6	300	45	9	1	43	1.46
722367--723332	263	3.6	260	75	10	849	43	8	5	42	1.57
722114--723423	536	2.4	534	82	5	1504	42	8	5	43	1.59
724931--725098	80	2.1	80	87	2	248	34	23	7	33	1.84
736102--736326	80	2.8	79	86	3	281	35	25	8	31	1.86
741613--741757	29	5.0	28	76	8	121	42	9	10	37	1.72
741644--741759	59	2.0	59	81	6	137	43	9	7	38	1.66
741899--741932	17	2.0	17	88	11	52	41	0	14	44	1.45
745770--745867	28	3.5	28	72	5	72	31	16	25	26	1.96
750364--750401	20	1.9	19	89	5	58	31	18	18	31	1.95
763914--763956	20	2.2	20	83	8	52	37	2	16	44	1.60
769193--769261	34	2.0	34	100	0	138	31	5	8	53	1.55
779598--779629	16	2.0	16	93	0	55	68	21	0	9	1.17
780434--780471	16	2.5	15	84	12	51	23	0	2	73	0.95
785560--785595	15	2.4	16	90	9	58	22	0	19	58	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
789907--789934	4	7.0	4	100	0	56	50	0	0	50	1.00
806158--806316	35	4.5	35	84	3	174	36	8	15	40	1.77
806158--806295	72	1.9	71	86	1	195	35	8	14	41	1.77
816893--817048	35	4.4	35	83	4	152	37	7	13	41	1.72
816876--817029	71	2.2	71	85	1	202	35	7	12	44	1.71
816845--817029	35	5.3	36	80	5	202	34	7	13	44	1.72
816963--817020	18	3.3	18	64	22	50	31	6	17	44	1.75
816845--817048	106	1.9	104	87	3	293	36	7	13	43	1.72
826459--826606	35	4.2	35	81	2	161	41	14	8	36	1.75
826459--826581	35	3.5	35	88	2	165	42	14	6	36	1.72
831178--831216	21	1.9	20	84	5	51	53	15	0	30	1.42
833611--833661	15	3.4	15	78	10	59	33	0	11	54	1.37
835633--835701	30	2.3	30	82	0	93	18	13	23	44	1.84
836535--836583	20	2.5	19	83	9	64	20	2	6	71	1.18
838909--838954	15	3.1	14	84	6	56	26	0	13	60	1.32
839165--839231	34	2.0	34	90	0	107	34	7	14	43	1.74
863795--863844	21	2.4	21	96	0	91	30	10	22	38	1.86
865095--865170	37	2.1	37	84	0	98	28	23	13	34	1.92
877036--877074	18	2.2	18	85	0	51	51	15	10	23	1.73
887050--887093	21	2.1	21	82	0	52	20	0	13	65	1.26
919617--919874	128	2.0	129	83	2	322	31	13	20	33	1.92
920889--920931	22	2.0	22	95	0	77	27	6	27	37	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
929654--929733	26	3.0	26	90	1	115	51	6	12	30	1.64
929659--929747	26	3.4	25	83	9	99	52	6	14	25	1.66
933905--933965	23	2.7	23	75	7	63	40	24	11	22	1.87
955226--955390	75	2.2	77	86	5	237	37	12	9	40	1.75
956435--956474	18	2.2	18	100	0	80	50	7	0	42	1.30
966173--966206	16	2.2	16	89	5	52	20	2	8	67	1.31
969513--969548	18	2.1	17	89	5	54	22	30	11	36	1.89
971159--971212	28	1.9	28	88	0	81	44	9	16	29	1.79
972386--972510	36	3.4	36	75	16	137	22	19	20	37	1.94
972360--972524	76	2.2	76	90	3	262	25	20	18	35	1.95
979536--979670	49	2.8	49	90	2	218	33	15	26	24	1.95
995036--995078	21	2.0	21	100	0	86	13	18	25	41	1.88
997650--997685	18	2.0	18	94	0	63	36	11	30	22	1.89
998824--998923	25	4.0	23	72	20	69	5	13	4	78	1.06
1001322--1001363	18	2.4	18	88	4	59	33	11	30	23	1.91
1012454--1012506	23	2.3	23	96	0	97	15	30	22	32	1.94
1013777--1013844	34	2.0	34	94	0	118	39	13	19	27	1.89
1031475--1031527	23	2.3	23	90	0	79	32	20	28	18	1.97
1034550--1034577	3	9.3	3	100	0	56	32	0	0	67	0.91
1042068--1042119	23	2.3	23	82	0	59	23	25	19	32	1.97
1042859--1043121	144	1.8	146	90	3	424	49	14	11	24	1.76
1043482--1043603	60	2.0	60	100	0	244	42	11	18	27	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1050216--1050525	155	2.0	155	94	0	539	42	10	20	27	1.84
1051049--1051197	73	2.0	74	81	3	176	24	17	13	44	1.85
1055278--1055476	74	2.7	74	83	4	249	41	14	20	23	1.89
1055888--1055997	35	3.2	35	74	7	118	29	10	23	36	1.89
1055882--1055983	32	3.1	32	72	8	96	29	11	20	38	1.88
1063478--1063519	15	2.9	15	82	7	50	76	11	7	4	1.15
1064273--1064352	17	4.9	17	70	20	55	73	1	3	21	1.06
1064273--1064351	27	3.1	26	80	5	72	73	1	3	21	1.06
1067657--1067701	18	2.5	19	89	7	67	40	11	22	26	1.87
1070730--1070800	35	2.0	35	94	0	124	33	32	11	22	1.90
1074172--1074277	56	1.9	56	98	0	203	37	8	7	46	1.63
1081290--1081320	2	15.5	2	100	0	62	51	48	0	0	1.00
1081696--1081774	25	3.0	26	76	16	83	26	21	29	22	1.99
1081733--1081791	25	2.4	25	85	5	75	28	15	28	27	1.96
1098274--1098315	22	1.9	22	100	0	84	35	7	19	38	1.79
1102366--1102529	76	2.1	77	83	3	206	39	12	7	40	1.72
1108925--1108968	10	4.4	10	81	18	56	25	0	2	72	0.96
1108889--1108968	27	2.8	26	81	14	72	25	0	6	68	1.12
1108934--1108982	21	2.3	21	86	6	64	26	2	4	67	1.19
1110684--1110735	26	2.0	26	88	0	77	36	25	11	26	1.90
1119442--1119476	17	2.0	18	88	5	54	48	0	8	42	1.33
1122436--1122519	29	2.9	30	85	3	109	38	21	8	32	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1123353--1123528	40	4.4	40	83	0	181	25	14	17	43	1.86
1123515--1123791	52	5.4	51	77	4	225	28	12	24	35	1.91
1123545--1123791	104	2.4	103	82	2	307	27	12	24	35	1.91
1124443--1124473	11	2.8	11	95	0	53	0	22	0	77	0.77
1124502--1124547	18	2.4	20	86	13	62	4	15	0	80	0.86
1124517--1124551	9	4.0	9	85	7	54	0	17	0	82	0.66
1124667--1124736	35	2.0	36	86	8	99	7	18	0	74	1.04
1124687--1124777	25	3.8	24	77	16	109	4	19	0	75	0.96
1124693--1124733	13	3.2	13	82	3	57	4	14	0	80	0.87
1124675--1124775	45	2.2	46	85	13	131	4	20	0	74	1.00

Tables:   1   2   3   4   5   6