genome.fa.s23.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397276.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_106.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2845708

Tables:   1   2   3   4   5   6   

This is table  4  of  6  ( 653 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1459860--1459904	9	5.0	9	94	0	54	35	0	31	33	1.58
1463162--1463206	21	2.2	20	84	4	54	48	6	4	40	1.49
1476489--1476536	19	2.6	19	90	3	71	39	4	0	56	1.19
1479277--1479316	7	5.7	7	84	0	53	0	32	0	67	0.91
1479276--1479316	21	2.0	21	100	0	82	0	31	0	68	0.90
1479279--1479324	21	2.2	21	84	7	58	0	36	0	63	0.95
1480417--1480649	116	2.0	116	98	0	448	23	18	15	42	1.88
1482422--1482450	10	2.7	11	89	10	51	72	0	6	20	1.07
1482699--1482755	23	2.5	22	78	13	53	38	1	5	54	1.33
1488757--1488789	16	2.0	17	88	5	50	42	24	6	27	1.78
1490806--1490838	18	1.9	17	88	11	50	57	6	3	33	1.38
1490812--1490845	18	1.9	18	88	5	52	58	8	2	29	1.43
1492182--1492228	21	2.2	21	85	7	60	63	4	0	31	1.13
1497264--1498272	504	2.0	504	91	0	1617	24	27	16	31	1.96
1507055--1507216	67	2.4	67	95	2	290	46	3	2	46	1.33
1507080--1507189	36	3.2	35	64	25	90	49	4	2	43	1.37
1515449--1515595	70	2.1	69	83	1	186	19	17	30	33	1.94
1515464--1515562	23	4.3	23	65	7	56	18	19	30	32	1.95
1515489--1515641	23	6.6	23	70	8	78	16	15	32	35	1.90
1515672--1515718	16	2.7	18	75	18	55	12	4	4	78	1.04
1531588--1531638	10	5.0	10	75	13	50	66	0	33	0	0.92
1531592--1531644	15	3.4	16	80	15	58	69	0	30	0	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1531593--1531639	24	1.9	25	87	12	71	68	0	31	0	0.90
1531590--1531664	28	2.7	27	78	15	66	68	0	30	1	0.98
1532091--1532124	14	2.4	14	85	0	50	52	2	2	41	1.31
1533048--1533127	41	2.0	41	100	0	160	20	22	25	32	1.98
1534774--1534803	15	2.0	15	93	0	51	56	0	20	23	1.42
1548732--1548799	35	1.9	35	100	0	136	35	2	27	33	1.72
1596720--1596759	19	2.1	19	86	9	55	25	7	5	62	1.42
1596789--1596834	21	2.1	21	88	4	65	30	4	0	65	1.12
1614288--1614375	31	2.9	31	84	1	124	20	34	19	26	1.96
1618384--1618430	21	2.2	21	84	3	58	65	4	2	27	1.22
1618402--1619814	254	5.7	253	74	9	821	49	7	11	32	1.66
1618402--1619814	252	5.7	249	74	9	895	49	7	11	32	1.66
1619987--1620779	254	3.1	251	76	7	559	47	6	10	35	1.66
1624151--1624459	68	4.6	68	86	6	353	33	18	11	36	1.87
1624151--1624459	137	2.3	133	81	8	340	33	18	11	36	1.87
1638897--1638928	17	1.9	16	93	6	55	59	3	6	31	1.38
1642243--1642290	25	1.9	25	91	0	78	22	27	16	33	1.96
1645211--1645271	33	1.9	31	83	6	77	42	0	0	57	0.98
1649478--1650105	214	2.9	213	79	8	681	38	11	14	35	1.82
1657866--1657971	8	14.2	8	71	14	66	0	30	0	67	1.03
1657891--1657971	4	21.5	4	77	9	73	1	27	1	70	1.02
1657870--1657963	37	2.5	37	84	3	125	1	29	1	68	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1657871--1657972	45	2.3	44	85	8	127	0	29	0	68	1.02
1657889--1657988	45	2.2	45	82	3	121	3	31	1	65	1.15
1672797--1672845	23	2.1	24	88	11	75	44	0	0	55	0.99
1688181--1688293	58	1.9	58	90	0	181	37	18	10	33	1.85
1708081--1708120	12	3.5	12	77	22	50	40	0	0	60	0.97
1723477--1723595	60	2.0	60	98	0	229	42	21	11	24	1.86
1726773--1726805	15	2.1	17	88	11	52	21	9	3	66	1.33
1730335--1730400	28	2.4	28	84	0	96	33	15	16	34	1.90
1731296--1731322	13	2.1	13	100	0	54	55	14	14	14	1.70
1732488--1732570	10	7.9	10	70	10	58	37	22	9	30	1.86
1732509--1732566	31	1.9	30	96	3	107	37	20	10	31	1.86
1737552--1737586	18	1.9	18	88	0	52	31	17	11	40	1.85
1740953--1741082	34	3.9	34	72	8	113	26	9	25	38	1.86
1740967--1741097	34	3.9	35	73	6	101	29	8	25	36	1.85
1740947--1741092	67	2.2	68	82	6	172	28	8	25	37	1.85
1740967--1741107	67	2.1	67	79	7	153	30	8	24	36	1.85
1743478--1743515	19	2.0	20	84	5	51	26	15	34	23	1.95
1748041--1748070	2	15.0	2	100	0	60	50	0	0	50	1.00
1751428--1751460	16	2.0	17	88	5	50	39	3	9	48	1.50
1753539--1753646	54	2.0	54	98	0	207	30	25	17	25	1.97
1754296--1754335	16	2.5	16	95	0	71	17	25	20	37	1.94
1756319--1756368	20	2.5	19	77	6	55	42	10	24	24	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1759241--1759529	80	3.6	79	83	2	346	32	24	10	32	1.89
1761234--1761415	74	2.5	73	83	4	206	21	19	15	42	1.88
1766126--1766154	2	14.5	2	100	0	58	0	48	0	51	1.00
1768225--1768275	22	2.3	22	86	6	68	37	3	9	49	1.55
1768239--1768275	6	6.5	6	84	12	51	37	0	10	51	1.37
1768236--1768280	16	2.8	16	93	0	72	40	0	11	48	1.39
1768237--1768280	10	4.4	10	88	0	61	38	0	11	50	1.39
1776922--1776978	21	2.7	21	74	15	55	45	12	15	26	1.82
1787270--1787326	28	2.0	28	93	0	96	45	17	14	22	1.84
1807941--1808001	33	1.9	33	83	6	81	32	22	18	26	1.97
1808579--1808620	22	2.0	21	85	4	57	45	14	4	35	1.66
1808676--1808742	21	3.1	21	70	16	57	52	14	4	28	1.62
1808870--1808910	21	2.0	21	85	0	55	46	19	12	21	1.82
1815109--1815156	24	2.0	23	84	15	62	0	37	16	45	1.48
1815123--1815156	12	2.8	12	90	0	59	0	38	17	44	1.49
1830938--1831010	33	2.2	33	85	9	96	24	19	21	34	1.96
1837189--1837234	23	2.0	23	95	0	83	10	13	23	52	1.71
1838525--1838571	22	2.1	22	96	0	85	6	21	25	46	1.74
1840210--1840298	41	2.1	42	95	4	171	40	11	17	30	1.85
1841114--1841155	17	2.6	16	92	3	66	35	7	11	45	1.69
1859600--1859775	65	2.7	65	84	0	192	31	22	14	31	1.94
1859621--1859775	65	2.4	65	85	0	193	31	21	15	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1860151--1860189	13	3.2	13	79	20	57	48	7	12	30	1.69
1875135--1875192	24	2.5	24	86	8	75	15	5	6	72	1.24
1876623--1876672	16	3.1	16	100	0	100	32	12	20	36	1.89
1892753--1892782	2	15.0	2	92	0	51	50	3	0	46	1.18
1907223--1907356	73	1.9	69	84	6	178	38	17	20	23	1.94
1911382--1911407	13	2.0	13	100	0	52	53	0	15	30	1.42
1917267--1917787	71	7.2	71	75	8	338	22	19	24	33	1.97
1917295--1917760	147	3.2	147	79	7	441	23	18	25	32	1.97
1920689--1920717	5	5.8	5	100	0	58	41	0	0	58	0.98
1924096--1924178	26	3.2	26	94	0	148	21	26	28	22	1.99
1924773--1924839	23	2.9	23	88	0	98	26	26	17	28	1.98
1924825--1924954	23	5.7	23	70	10	77	28	30	11	30	1.92
1924925--1924978	23	2.3	23	81	9	65	29	31	12	25	1.93
1925243--1925416	23	7.7	23	76	10	133	24	31	11	32	1.91
1925244--1925366	44	2.7	43	78	9	122	25	30	12	31	1.92
1925244--1925412	90	1.9	90	81	4	207	24	31	11	31	1.91
1925361--1925433	23	3.2	21	74	14	65	21	32	10	34	1.89
1925461--1925528	23	3.0	23	86	0	91	27	35	10	26	1.89
1925463--1925538	23	3.3	23	84	0	89	26	34	11	27	1.91
1927132--1927288	64	2.5	64	86	3	217	30	24	15	28	1.96
1932528--1932567	18	2.2	18	86	0	53	32	0	0	67	0.91
1932701--1932739	18	2.2	18	90	0	60	56	2	0	41	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1932701--1932746	18	2.7	17	83	6	58	63	2	0	34	1.07
1933236--1933271	18	2.1	18	89	5	56	77	8	2	11	1.08
1933713--1933754	7	6.0	7	83	10	50	9	4	2	83	0.88
1934109--1934143	14	2.5	14	100	0	70	42	8	8	40	1.66
1937002--1937156	63	2.4	64	80	6	163	32	15	20	31	1.93
1939371--1940024	254	2.6	253	78	5	653	51	7	10	30	1.64
1947142--1947301	35	4.5	35	80	2	167	43	13	8	35	1.73
1952369--1952429	30	2.1	29	81	9	70	49	0	4	45	1.23
1958096--1958133	15	2.5	15	100	0	76	26	13	23	36	1.91
1959918--1960070	64	2.4	64	78	2	164	30	21	16	31	1.95

Tables:   1   2   3   4   5   6