genome.fa.s23.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397276.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_106.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2845708

Tables:   1   2   3   4   5   6   

This is table  3  of  6  ( 653 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1124710--1124753	10	4.3	10	82	5	61	0	22	0	77	0.77
1124675--1124753	20	4.2	20	72	19	64	3	21	0	74	0.97
1124885--1124936	24	2.2	24	86	6	72	5	15	0	78	0.92
1124898--1124945	24	2.0	25	83	4	62	4	16	0	79	0.89
1124987--1125023	10	3.8	10	80	20	51	8	21	0	70	1.13
1124985--1125036	10	5.4	9	76	13	50	5	19	0	75	1.01
1125071--1125125	28	2.0	28	88	0	83	29	16	0	54	1.42
1125251--1125316	17	3.6	17	75	13	60	3	16	1	78	0.95
1125269--1125435	86	2.0	85	82	5	205	13	21	1	63	1.38
1125343--1125396	20	2.8	19	78	18	58	3	22	0	74	0.98
1125369--1125411	20	2.2	20	83	8	52	2	25	2	69	1.12
1125475--1125528	9	5.6	9	77	16	54	3	18	0	77	0.91
1125482--1125519	11	3.6	11	79	13	53	5	18	0	76	0.97
1125475--1125528	20	2.7	20	97	0	99	3	18	0	77	0.91
1125608--1125714	22	4.6	22	75	17	92	2	23	0	73	0.96
1125603--1125693	11	7.7	12	72	12	64	3	20	0	75	0.94
1125603--1125714	47	2.4	46	81	11	122	3	22	0	74	0.97
1125732--1125810	9	8.6	9	70	14	54	5	16	1	77	1.01
1125751--1125803	16	3.1	16	77	15	61	3	20	0	75	0.96
1125732--1125810	19	4.3	18	72	15	63	5	16	1	77	1.01
1125863--1125985	51	2.4	51	75	15	128	17	17	2	62	1.43
1127351--1127382	3	10.7	3	93	0	55	0	31	3	65	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1128428--1128471	2	22.0	2	100	0	88	50	0	0	50	1.00
1132302--1132520	119	1.8	119	90	1	350	43	12	14	28	1.82
1136976--1137015	18	2.2	18	91	8	64	27	10	17	45	1.80
1138454--1138524	29	2.4	29	86	4	90	35	22	23	18	1.96
1138502--1138560	25	2.4	25	83	5	77	33	13	25	27	1.93
1138641--1138685	23	1.9	23	82	13	56	33	11	26	28	1.91
1140999--1141042	20	2.2	20	87	0	61	15	22	9	52	1.71
1143131--1143165	2	17.5	2	93	0	61	51	2	0	45	1.16
1159012--1159036	2	12.5	2	100	0	50	48	0	0	52	1.00
1161453--1161518	33	2.0	33	100	0	132	39	18	12	30	1.87
1170530--1170568	15	2.6	15	95	0	69	38	17	0	43	1.50
1180717--1180867	80	1.9	80	90	2	241	32	7	24	35	1.84
1183254--1183328	31	2.4	31	80	4	80	49	6	20	24	1.72
1184052--1184078	2	13.5	2	100	0	54	48	0	0	51	1.00
1184912--1184964	24	2.4	21	77	17	61	22	24	20	32	1.98
1184918--1184985	24	2.8	24	88	4	93	23	25	23	27	2.00
1195499--1195574	29	2.6	28	81	8	89	38	6	19	35	1.78
1198363--1198413	26	2.0	25	82	14	61	39	23	5	31	1.79
1198502--1198569	29	2.3	28	80	9	82	39	10	17	32	1.84
1208454--1208492	20	2.0	20	100	0	78	53	5	25	15	1.62
1211867--1211905	20	2.0	20	89	0	60	17	23	2	56	1.53
1212694--1212781	29	3.0	28	81	3	95	32	19	23	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1212774--1212839	34	2.0	33	84	3	87	18	13	31	36	1.90
1221248--1221350	30	3.4	29	68	17	77	32	22	11	33	1.90
1242836--1242971	73	1.9	68	86	7	191	37	17	14	30	1.90
1244069--1244121	27	2.0	27	81	3	63	32	1	3	62	1.24
1245476--1245584	26	4.1	25	73	18	78	29	10	15	44	1.79
1245473--1245584	55	2.1	51	83	8	136	30	9	15	44	1.78
1245473--1245545	24	3.0	24	75	15	76	30	8	16	45	1.76
1245700--1245796	48	2.0	48	97	0	185	31	17	9	41	1.81
1245702--1245777	24	3.2	24	66	7	73	30	17	10	42	1.82
1245711--1245786	24	3.2	24	68	7	73	34	15	7	42	1.76
1247215--1247274	15	3.8	15	77	12	66	73	0	1	25	0.93
1247211--1247276	33	2.0	33	88	5	98	71	0	1	27	0.95
1247219--1247294	33	2.2	36	80	15	99	73	0	2	23	0.95
1248486--1248646	73	2.3	66	82	10	198	36	18	14	30	1.91
1249752--1249802	17	3.3	17	69	25	58	39	0	0	60	0.97
1249738--1249807	29	2.4	29	100	0	140	35	0	0	64	0.94
1251373--1251399	14	1.9	14	100	0	54	40	0	14	44	1.46
1251912--1251970	30	2.0	30	83	6	75	42	10	18	28	1.83
1252059--1252129	26	2.6	26	74	20	65	14	9	1	74	1.13
1252699--1252736	20	1.9	20	100	0	76	47	10	15	26	1.78
1253814--1253867	18	3.0	18	86	0	81	38	12	25	22	1.90
1253810--1253883	36	2.1	36	87	5	105	39	13	22	24	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1253931--1254211	99	2.9	97	88	3	400	34	16	24	24	1.96
1253931--1254211	148	1.9	147	86	3	404	34	16	24	24	1.96
1253931--1254211	49	5.7	49	89	3	386	34	16	24	24	1.96
1256019--1256215	62	3.2	62	85	5	274	50	14	15	19	1.78
1258968--1259037	18	3.9	18	83	3	79	41	12	22	22	1.88
1258964--1259037	36	2.1	36	85	10	98	40	13	21	24	1.89
1259202--1259231	15	2.0	15	93	0	51	26	23	26	23	2.00
1259153--1259285	64	2.1	64	89	0	203	33	18	24	23	1.96
1259115--1259336	113	2.0	112	87	0	318	33	15	25	25	1.95
1259217--1259476	49	5.3	49	84	2	308	34	15	23	26	1.94
1259217--1259476	97	2.7	98	84	1	326	34	15	23	26	1.94
1266631--1266666	18	2.0	18	100	0	72	33	16	11	38	1.84
1275668--1275719	26	2.0	26	96	0	95	28	23	25	23	1.99
1286847--1286871	2	12.5	2	100	0	50	52	0	0	48	1.00
1297034--1297190	64	2.4	63	85	4	215	32	23	12	31	1.91
1303064--1303111	19	2.6	19	93	3	80	39	6	0	54	1.26
1303561--1303590	2	15.0	2	100	0	60	50	0	0	50	1.00
1306973--1307055	21	4.0	21	84	9	98	45	15	7	31	1.73
1307240--1307305	21	3.2	21	82	2	89	45	24	4	25	1.72
1310896--1310989	39	2.4	39	98	0	179	59	9	9	21	1.57
1312354--1312394	19	2.2	19	95	0	73	60	0	7	31	1.24
1320585--1320628	21	2.0	22	86	4	63	61	9	0	29	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1320829--1320868	9	4.4	9	100	0	80	32	10	12	45	1.75
1321792--1322005	68	3.1	68	81	4	216	38	10	16	34	1.84
1321909--1322036	68	1.9	67	84	9	170	35	14	18	31	1.91
1323963--1324099	29	4.7	28	79	9	125	37	13	10	39	1.78
1323966--1324105	57	2.4	58	82	7	151	37	12	10	39	1.77
1327223--1327262	2	20.0	2	100	0	80	50	50	0	0	1.00
1329830--1329870	17	2.5	17	80	11	50	7	12	2	78	1.06
1330283--1330364	37	2.2	36	81	14	89	30	0	2	67	1.04
1345394--1345648	127	2.0	127	95	0	456	30	11	21	36	1.89
1364173--1364253	27	3.0	27	96	0	153	28	14	16	40	1.88
1367790--1368196	209	2.0	208	91	1	654	19	30	8	41	1.82
1369556--1369710	60	2.6	61	83	3	199	26	15	30	27	1.96
1376621--1376653	2	16.5	2	100	0	66	51	0	0	48	1.00
1384212--1384272	32	2.0	32	87	6	90	39	8	22	29	1.83
1386778--1386837	25	2.4	25	80	0	75	25	30	16	28	1.97
1388975--1389006	16	2.0	16	93	0	55	21	18	6	53	1.67
1391842--1391887	22	2.0	22	84	12	58	28	34	4	32	1.77
1393655--1393679	11	2.3	11	100	0	50	28	0	0	72	0.86
1419674--1419960	60	4.8	60	73	9	183	29	27	12	29	1.93
1420512--1420557	21	2.2	21	84	0	56	41	10	15	32	1.82
1422748--1422809	4	15.8	4	86	9	92	74	0	25	0	0.82
1424060--1424116	25	2.3	25	75	0	60	21	17	33	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1426512--1426595	28	3.0	28	94	0	150	29	9	27	33	1.88
1427778--1427951	73	2.4	72	75	7	172	39	12	17	30	1.86
1436850--1436875	12	2.2	12	100	0	52	30	0	46	23	1.53
1446337--1446369	17	1.9	17	88	11	50	42	12	3	42	1.57
1446532--1446590	28	2.1	28	87	6	84	37	11	10	40	1.76
1446598--1446667	29	2.5	28	81	4	86	44	14	8	32	1.75
1446620--1446675	29	1.9	29	82	7	69	44	10	12	32	1.77
1449423--1449463	21	2.1	19	86	9	55	29	0	9	60	1.28
1455435--1455484	21	2.5	21	87	12	70	32	0	10	58	1.31
1459860--1459899	3	13.3	3	94	0	71	35	0	30	35	1.58

Tables:   1   2   3   4   5   6