Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: NW_018397276.1 Herrania umbratica cultivar Fairchild unplaced genomic scaffold, ASM216827v2 scaffold_106.0, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  2845708

Tables:   1   2   3   4   5   6   

This is table  6  of  6  ( 653 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2627069--2627133
31
2.1
30
82
2
85
67
0
30
1
1.00
2633598--2633637
21
1.9
21
84
0
53
17
32
0
50
1.47
2634228--2635278
447
2.3
443
79
6
1043
39
15
15
29
1.88
2640594--2640636
21
2.0
21
90
0
68
48
9
20
20
1.77
2642563--2642609
23
2.0
23
88
8
69
6
2
34
57
1.36
2644340--2644381
17
2.7
16
85
10
52
38
4
0
57
1.20
2646260--2646337
31
2.6
30
80
8
95
62
1
34
1
1.11
2646258--2646341
8
10.8
8
76
12
77
61
1
35
1
1.11
2651845--2651888
17
2.6
17
89
7
63
75
2
2
20
1.03
2657221--2657268
21
2.3
21
85
0
60
43
14
18
22
1.87
2659194--2659240
23
2.0
23
88
8
69
6
2
34
57
1.36
2664573--2664615
17
2.4
18
81
14
54
72
0
4
23
1.04
2668493--2669591
445
2.5
444
80
4
1214
28
15
16
38
1.89
2670665--2670694
12
2.5
12
100
0
60
46
0
23
30
1.52
2686118--2686162
19
2.3
19
88
3
63
53
0
2
44
1.13
2687867--2687907
21
2.0
21
85
0
55
41
19
14
24
1.89
2689895--2689942
22
2.1
23
84
3
62
22
4
18
54
1.61
2694193--2694267
8
9.5
8
77
11
75
0
34
2
62
1.09
2695179--2695223
22
2.0
22
82
0
54
35
0
2
62
1.08
2696051--2696135
33
2.6
32
80
9
91
67
1
4
27
1.18
2698048--2698094
23
2.0
23
88
8
69
57
29
2
10
1.44
2700075--2700122
21
2.3
21
88
0
69
22
22
8
45
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2706263--2707369
448
2.5
446
80
3
1206
28
15
16
37
1.89
2707553--2707593
21
2.0
20
90
4
64
60
0
29
9
1.28
2712796--2713009
106
2.0
106
99
0
419
40
13
15
30
1.85
2717457--2717509
21
2.5
21
84
0
70
39
20
15
24
1.91
2720339--2720382
20
2.3
19
88
7
63
54
0
2
43
1.12
2725633--2725695
31
1.9
34
84
9
87
73
1
1
23
1.01
2725637--2725695
21
2.8
20
80
10
64
71
1
1
25
1.05
2728752--2728803
21
2.5
20
84
9
68
25
21
11
42
1.86
2728765--2728814
21
2.4
21
93
6
84
22
20
12
46
1.83
2740584--2740637
21
2.6
21
74
11
56
40
16
14
27
1.88
2748944--2749014
16
4.6
15
77
16
65
1
30
1
66
1.09
2748944--2749015
31
2.3
31
85
4
101
2
30
1
65
1.15
2748955--2749003
8
6.2
8
78
4
55
0
34
0
65
0.93
2751277--2751325
25
1.9
26
83
4
64
65
2
6
26
1.27
2761357--2762739
446
3.1
443
82
4
1541
28
15
16
38
1.90
2764602--2764643
20
2.2
19
87
8
59
57
0
2
40
1.12
2766626--2766650
11
2.3
11
100
0
50
44
0
24
32
1.54
2774738--2774790
21
2.5
21
81
0
61
37
20
15
26
1.92
2779266--2779331
21
3.2
19
79
12
69
72
1
0
25
0.93
2779275--2779328
16
3.5
15
78
14
56
74
0
0
25
0.83
2779282--2779336
15
3.6
14
77
15
56
70
1
0
27
0.97
2779266--2779331
31
2.0
33
85
11
91
72
1
0
25
0.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2782765--2782827
21
3.0
21
81
9
67
20
17
14
47
1.82
2793384--2793436
21
2.5
21
81
0
61
35
16
18
28
1.93
2798072--2798106
18
1.9
18
100
0
70
22
22
20
34
1.97
2799310--2799371
33
1.9
32
90
3
97
61
0
8
30
1.25
2799591--2799627
15
2.5
15
90
0
56
37
27
5
29
1.79
2807194--2807241
21
2.3
21
88
0
69
20
16
14
47
1.82
2812838--2814792
445
4.4
445
79
5
1845
29
15
16
39
1.89
2824383--2824509
32
4.0
32
92
0
209
40
3
18
38
1.66
2826278--2827397
443
2.5
443
85
2
1440
29
15
17
37
1.90

Tables:   1   2   3   4   5   6

The End!